Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
5e886e72 by Andreas Tille at 2022-03-15T13:42:31+00:00
automatic update
- - - - -
3 changed files:
- debian-med-tests.txt
- debian-science-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,17 +1,17 @@
-Last-Update: Tue, 15 Mar 2022 01:42:04 +0000
+Last-Update: Tue, 15 Mar 2022 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 183 | {covid-19,imaging} |
- orthanc | 101 | {imaging,covid-19,practice} |
+ dcmtk | 181 | {covid-19,imaging} |
+ orthanc | 98 | {imaging,covid-19,practice} |
orthanc-wsi | 48 | {his,laboratory,covid-19,oncology,practice,imaging} |
dicomscope | 28 | {imaging} |
dicom3tools | 27 | {imaging} |
- amide | 24 | {imaging} |
+ amide | 25 | {imaging} |
dcm2niix | 18 | {imaging} |
orthanc-webviewer | 17 | {imaging} |
+ openslide | 16 | {imaging} |
gnumed-server | 15 | {practice,covid-19} |
- openslide | 14 | {imaging} |
gdcm | 13 | {covid-19,imaging} |
dicomnifti | 11 | {imaging} |
invesalius | 11 | {imaging} |
@@ -27,15 +27,15 @@ Last-Update: Tue, 15 Mar 2022 01:42:04 +0000
orthanc-postgresql | 8 | {imaging} |
salmon | 8 | {bio,covid-19} |
jebl2 | 7 | {bio-dev} |
- librg-utils-perl | 7 | {bio} |
orthanc-dicomweb | 7 | {covid-19,imaging} |
- treeview | 7 | {bio-phylogeny,bio} |
libminc | 6 | {imaging-dev} |
libncl | 6 | {bio} |
+ librg-utils-perl | 6 | {bio} |
mia | 6 | {imaging} |
nifti2dicom | 6 | {imaging} |
oscar | 6 | {practice,tools,data} |
plastimatch | 6 | {imaging} |
+ treeview | 6 | {bio-phylogeny,bio} |
beast-mcmc | 5 | {bio-phylogeny,bio} |
bio-tradis | 5 | {bio-dev,bio} |
clonalorigin | 5 | {bio} |
@@ -46,9 +46,6 @@ Last-Update: Tue, 15 Mar 2022 01:42:04 +0000
nifticlib | 5 | {imaging-dev} |
nipype | 5 | {imaging-dev,imaging} |
orthanc-mysql | 5 | {imaging} |
- stacks | 5 | {bio} |
- tracetuner | 5 | {bio} |
- zalign | 5 | {cloud,bio} |
anfo | 4 | {bio,cloud} |
arden | 4 | {cloud,bio} |
bitseq | 4 | {bio} |
@@ -63,12 +60,10 @@ Last-Update: Tue, 15 Mar 2022 01:42:04 +0000
libsbml | 4 | {bio-dev} |
mauve-aligner | 4 | {bio} |
melting | 4 | {bio,cloud} |
- rdp-alignment | 4 | {bio} |
runcircos-gui | 4 | {bio} |
- saint | 4 | {bio} |
- sibsim4 | 4 | {cloud,bio} |
- surankco | 4 | {bio} |
- tvc | 4 | {bio} |
+ stacks | 4 | {bio} |
+ tracetuner | 4 | {bio} |
+ zalign | 4 | {cloud,bio} |
assemblytics | 3 | {bio} |
atropos | 3 | {bio} |
blimps | 3 | {bio} |
@@ -84,25 +79,18 @@ Last-Update: Tue, 15 Mar 2022 01:42:04 +0000
jmodeltest | 3 | {bio,bio-phylogeny} |
libdivsufsort | 3 | {bio-dev} |
libpal-java | 3 | {bio-dev} |
- librdp-taxonomy-tree-java | 3 | {bio-dev} |
metaphlan2 | 3 | {bio} |
mhap | 3 | {bio-ngs,bio} |
orthanc-gdcm | 3 | {imaging} |
phyutility | 3 | {bio,cloud} |
python-wdlparse | 3 | {bio-dev} |
qcumber | 3 | {bio} |
- rambo-k | 3 | {bio} |
- rdp-classifier | 3 | {bio} |
- rtax | 3 | {bio,cloud} |
- sga | 3 | {bio} |
+ rdp-alignment | 3 | {bio} |
+ saint | 3 | {bio} |
+ sibsim4 | 3 | {cloud,bio} |
sift | 3 | {bio} |
- soapaligner | 3 | {bio} |
- soapsnp | 3 | {bio} |
- sprai | 3 | {bio} |
- spread-phy | 3 | {bio-phylogeny,bio} |
- staden | 3 | {bio} |
- suitename | 3 | {bio} |
- trace2dbest | 3 | {bio} |
+ surankco | 3 | {bio} |
+ tvc | 3 | {bio} |
bart-view | 2 | {imaging} |
biomaj3-cli | 2 | {cloud} |
cufflinks | 2 | {bio,cloud} |
@@ -112,17 +100,27 @@ Last-Update: Tue, 15 Mar 2022 01:42:04 +0000
intake | 2 | {bio,bio-dev} |
kmerresistance | 2 | {bio} |
libbio-mage-utils-perl | 2 | {bio-dev} |
+ librdp-taxonomy-tree-java | 2 | {bio-dev} |
microbegps | 2 | {bio} |
orthanc-python | 2 | {covid-19} |
+ pigx-rnaseq | 2 | {covid-19,bio} |
piler | 2 | {bio} |
placnet | 2 | {bio} |
plasmidseeker | 2 | {bio} |
proalign | 2 | {bio-phylogeny,bio} |
pscan-chip | 2 | {bio} |
pymia | 2 | {imaging-dev} |
- skesa | 2 | {bio} |
- thesias | 2 | {bio,covid-19} |
- tophat-recondition | 2 | {bio,covid-19} |
+ rambo-k | 2 | {bio} |
+ rdp-classifier | 2 | {bio} |
+ rtax | 2 | {bio,cloud} |
+ sga | 2 | {bio} |
+ soapaligner | 2 | {bio} |
+ soapsnp | 2 | {bio} |
+ sprai | 2 | {bio} |
+ spread-phy | 2 | {bio-phylogeny,bio} |
+ staden | 2 | {bio} |
+ suitename | 2 | {bio} |
+ trace2dbest | 2 | {bio} |
varscan | 2 | {bio,covid-19} |
bambamc | 1 | {bio-dev} |
cutesv | 1 | {bio} |
@@ -136,12 +134,14 @@ Last-Update: Tue, 15 Mar 2022 01:42:04 +0000
mssstest | 1 | {tools} |
opencfu | 1 | {laboratory} |
opensurgsim | 1 | {imaging-dev} |
- pigx-rnaseq | 1 | {covid-19,bio} |
pique | 1 | {bio} |
plasmidid | 1 | {covid-19,bio} |
pplacer | 1 | {covid-19,bio-phylogeny,bio} |
seq-gen | 1 | {bio} |
+ skesa | 1 | {bio} |
srf | 1 | {bio-dev} |
+ thesias | 1 | {bio,covid-19} |
+ tophat-recondition | 1 | {bio,covid-19} |
varna | 1 | {bio} |
acedb | 0 | {cloud,bio} |
biojava4-live | 0 | {bio-dev} |
@@ -189,8 +189,8 @@ Last-Update: Tue, 15 Mar 2022 01:42:04 +0000
parallel-fastq-dump | 0 | {covid-19} |
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
- python-seqcluster | 0 | {covid-19,bio-dev} |
python-seqcluster | 0 | {bio} |
+ python-seqcluster | 0 | {covid-19,bio-dev} |
resfinder-db | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
sight | 0 | {imaging-dev} |
=====================================
debian-science-tests.txt
=====================================
@@ -1,43 +1,43 @@
-Last-Update: Tue, 15 Mar 2022 01:42:04 +0000
+Last-Update: Tue, 15 Mar 2022 13:42:04 +0000
Source | Vote | Tasks | Tags
-----------------------------------------+--------+----------------------------------------------------------------------------------+--------------------------------------------------------------------
- gts | 3080 | {viewing} |
- sympy | 1720 | {physics,nanoscale-physics} |
- suitesparse | 282 | {mathematics-dev,numericalcomputation} |
- spyder | 230 | {numericalcomputation} |
- armadillo | 214 | {mathematics-dev} |
- python-pyqtgraph | 143 | {viewing} |
+ gts | 3090 | {viewing} |
+ sympy | 1703 | {physics,nanoscale-physics} |
+ suitesparse | 284 | {mathematics-dev,numericalcomputation} |
+ spyder | 224 | {numericalcomputation} |
+ armadillo | 217 | {mathematics-dev} |
+ python-pyqtgraph | 144 | {viewing} |
atlas | 87 | {mathematics-dev} |
cypari2 | 55 | {mathematics-dev} |
- arpack | 52 | {mathematics-dev} |
+ arpack | 51 | {mathematics-dev} |
arduino-mk | 49 | {robotics} |
- imview | 47 | {viewing} |
- pyzo | 43 | {numericalcomputation} |
- rubiks | 42 | {geometry,mathematics} |
- flintqs | 39 | {mathematics} |
+ imview | 48 | {viewing} |
+ pyzo | 42 | {numericalcomputation} |
+ rubiks | 39 | {geometry,mathematics} |
scalapack | 39 | {nanoscale-physics-dev} |
- eclib | 37 | {mathematics} |
- fftw | 30 | {physics-dev,meteorology-dev,mathematics-dev} |
- feedgnuplot | 24 | {viewing} |
+ flintqs | 38 | {mathematics} |
+ eclib | 36 | {mathematics} |
+ fftw | 28 | {physics-dev,meteorology-dev,mathematics-dev} |
+ feedgnuplot | 25 | {viewing} |
sketch | 24 | {typesetting} |
bossa | 23 | {devices} |
- guidata | 22 | {dataacquisition-dev} |
- guiqwt | 22 | {numericalcomputation,viewing} |
- ntl | 22 | {mathematics-dev} |
+ gts | 22 | {viewing-dev} |
geg | 21 | {viewing} |
- gts | 21 | {viewing-dev} |
+ guidata | 21 | {dataacquisition-dev} |
+ guiqwt | 21 | {numericalcomputation,viewing} |
+ ntl | 21 | {mathematics-dev} |
cernlib | 20 | {highenergy-physics} |
ppl | 19 | {numericalcomputation} |
- flann | 18 | {mathematics-dev,engineering-dev} |
neuron | 18 | {neuroscience-modeling,highenergy-physics,simulations} |
nltk | 18 | {linguistics} |
- vitables | 16 | {numericalcomputation} |
+ flann | 17 | {mathematics-dev,engineering-dev} |
cernlib | 15 | {highenergy-physics-dev} |
coinor-symphony | 15 | {numericalcomputation,logic,mathematics} |
matlab-support | 15 | {mathematics,numericalcomputation} |
opencascade | 15 | {simulations} |
picosat | 15 | {logic} |
+ vitables | 15 | {numericalcomputation} |
auto-07p | 14 | {mathematics} |
gfsview | 14 | {viewing} |
libm4ri | 14 | {mathematics-dev} |
@@ -45,48 +45,48 @@ Last-Update: Tue, 15 Mar 2022 01:42:04 +0000
tango | 14 | {dataacquisition} |
form | 13 | {mathematics} |
opticalraytracer | 13 | {physics} |
+ libitpp | 12 | {engineering-dev,mathematics-dev} |
lxi-tools | 12 | {engineering,dataacquisition} |
- pcl | 12 | {robotics-dev} |
- ros-ros-environment | 12 | {robotics-dev} |
- libitpp | 11 | {engineering-dev,mathematics-dev} |
mathgl | 11 | {viewing} |
neuron | 11 | {highenergy-physics-dev} |
- uctodata | 11 | {linguistics} |
- fftw | 10 | {meteorology-dev,physics-dev,mathematics-dev} |
+ pcl | 11 | {robotics-dev} |
+ ros-ros-environment | 11 | {robotics-dev} |
lrcalc | 10 | {mathematics-dev} |
rheolef | 10 | {mathematics} |
tango | 10 | {dataacquisition} |
- ucto | 10 | {linguistics} |
+ uctodata | 10 | {linguistics} |
cliquer | 9 | {mathematics} |
eclib | 9 | {mathematics-dev} |
getdp | 9 | {engineering,mathematics,simulations} |
polylib | 9 | {mathematics} |
- ros-rosconsole | 9 | {robotics-dev} |
- toulbar2 | 9 | {logic,physics,mathematics,numericalcomputation} |
+ ucto | 9 | {linguistics} |
+ urdfdom-headers | 9 | {robotics-dev} |
apophenia | 8 | {statistics} |
- debian-science | 8 | {nanoscale-physics,machine-learning,physics,economics} |
- debian-science | 8 | {physics,nanoscale-physics,machine-learning,economics,mathematics} |
+ fftw | 8 | {meteorology-dev,physics-dev,mathematics-dev} |
ipe-tools | 8 | {typesetting} |
libcgns | 8 | {engineering} |
libm4rie | 8 | {mathematics-dev} |
libzn-poly | 8 | {mathematics-dev} |
lrcalc | 8 | {mathematics} |
+ ros-rosconsole | 8 | {robotics-dev} |
syrthes | 8 | {engineering} |
- urdfdom-headers | 8 | {robotics-dev} |
+ toulbar2 | 8 | {logic,physics,mathematics,numericalcomputation} |
cliquer | 7 | {mathematics-dev} |
code-saturne | 7 | {engineering-dev,mathematics-dev} |
- debian-science | 7 | {physics,nanoscale-physics,statistics,economics} |
- debian-science | 7 | {neuroscience-cognitive,machine-learning} |
+ debian-science | 7 | {nanoscale-physics,machine-learning,physics,economics} |
+ debian-science | 7 | {physics,nanoscale-physics,machine-learning,economics,mathematics} |
dxsamples | 7 | {nanoscale-physics} |
etsf-io | 7 | {nanoscale-physics,physics} |
iml | 7 | {mathematics-dev} |
libbraiding | 7 | {mathematics-dev} |
scram | 7 | {engineering} |
- teem | 7 | {imageanalysis} |
cernlib | 6 | {highenergy-physics} |
coda | 6 | {meteorology} |
+ debian-science | 6 | {neuroscience-cognitive,machine-learning} |
+ debian-science | 6 | {physics,nanoscale-physics,statistics,economics} |
dune-uggrid | 6 | {mathematics-dev} |
gf2x | 6 | {mathematics-dev} |
+ ipe-tools | 6 | {typesetting} |
jeuclid | 6 | {typesetting,viewing} |
libgetdata | 6 | {dataacquisition} |
libvigraimpex | 6 | {machine-learning,imageanalysis-dev} |
@@ -95,24 +95,23 @@ Last-Update: Tue, 15 Mar 2022 01:42:04 +0000
opencascade | 6 | {simulations} |
psurface | 6 | {numericalcomputation} |
qd | 6 | {mathematics-dev} |
+ simbody | 6 | {robotics-dev} |
+ teem | 6 | {imageanalysis} |
astk | 5 | {engineering} |
coinmp | 5 | {logic,mathematics-dev,numericalcomputation} |
- debian-science | 5 | {tools} |
- debian-science | 5 | {electrophysiology} |
+ fastjet | 5 | {highenergy-physics-dev} |
hpcc | 5 | {distributedcomputing,numericalcomputation} |
- ipe-tools | 5 | {typesetting} |
libhomfly | 5 | {mathematics-dev} |
libmatheval | 5 | {mathematics} |
morse-simulator | 5 | {robotics} |
openstereogram | 5 | {tools} |
ratpoints | 5 | {mathematics-dev} |
- simbody | 5 | {robotics-dev} |
cernlib | 4 | {highenergy-physics} |
cimg | 4 | {imageanalysis-dev} | {x11::library}
- debian-science | 4 | {psychophysics} |
+ debian-science | 4 | {tools} |
+ debian-science | 4 | {electrophysiology} |
dimbl | 4 | {linguistics} |
dune-istl | 4 | {mathematics-dev} |
- fastjet | 4 | {highenergy-physics-dev} |
frog | 4 | {linguistics} |
irstlm | 4 | {linguistics} |
libcgns | 4 | {engineering-dev} |
@@ -122,39 +121,38 @@ Last-Update: Tue, 15 Mar 2022 01:42:04 +0000
newmat | 4 | {mathematics-dev} |
openmx | 4 | {nanoscale-physics,physics} |
qwtplot3d | 4 | {viewing-dev} |
- sac2mseed | 4 | {geography} |
taurus | 4 | {dataacquisition} |
alberta | 3 | {engineering-dev} |
apertium-streamparser | 3 | {linguistics} |
- apophenia | 3 | {statistics} |
cernlib | 3 | {highenergy-physics} |
clhep | 3 | {highenergy-physics-dev} |
- debian-science | 3 | {nanoscale-physics-dev} |
- debian-science | 3 | {electrophysiology} |
+ debian-science | 3 | {psychophysics} |
dxflib | 3 | {engineering-dev} |
jhdf | 3 | {engineering} |
jhdf | 3 | {engineering-dev} |
liblbfgs | 3 | {mathematics-dev} |
libmatheval | 3 | {mathematics-dev} |
- looptools | 3 | {highenergy-physics} |
looptools | 3 | {highenergy-physics-dev} |
+ looptools | 3 | {highenergy-physics} |
mbtserver | 3 | {linguistics} |
pynac | 3 | {mathematics-dev} |
python-escript | 3 | {simulations,numericalcomputation,engineering} |
+ sac2mseed | 3 | {geography} |
sardana | 3 | {dataacquisition} |
sollya | 3 | {mathematics-dev} |
sparskit | 3 | {mathematics-dev} |
- timbl | 3 | {linguistics} |
- timblserver | 3 | {linguistics} |
x13as | 3 | {economics} |
+ apophenia | 2 | {statistics} |
+ apriltag | 2 | {robotics-dev} |
cbflib | 2 | {nanoscale-physics} |
cbflib | 2 | {nanoscale-physics-dev} |
cernlib | 2 | {highenergy-physics} |
clipper | 2 | {nanoscale-physics-dev} |
coda | 2 | {meteorology-dev} |
- debian-science | 2 | {economics} |
- debian-science | 2 | {neuroscience-cognitive} |
debian-science | 2 | {physics} |
+ debian-science | 2 | {electrophysiology} |
+ debian-science | 2 | {nanoscale-physics-dev} |
+ debian-science | 2 | {neuroscience-cognitive} |
dune-localfunctions | 2 | {mathematics-dev} |
harp | 2 | {meteorology} |
libccp4 | 2 | {nanoscale-physics-dev} |
@@ -163,13 +161,15 @@ Last-Update: Tue, 15 Mar 2022 01:42:04 +0000
optlang | 2 | {mathematics-dev} |
ssm | 2 | {nanoscale-physics} |
tango | 2 | {dataacquisition-dev} |
- apriltag | 1 | {robotics-dev} |
+ timbl | 2 | {linguistics} |
+ timblserver | 2 | {linguistics} |
asl | 1 | {physics-dev} |
cld2 | 1 | {linguistics} |
code-saturne | 1 | {engineering-dev,mathematics-dev} |
collada-dom | 1 | {viewing-dev} |
cqrlib | 1 | {mathematics-dev} |
cvector | 1 | {mathematics-dev} |
+ debian-science | 1 | {economics} |
frogdata | 1 | {linguistics} |
gemmlowp | 1 | {mathematics-dev} |
itsol | 1 | {mathematics-dev} |
@@ -221,9 +221,9 @@ Last-Update: Tue, 15 Mar 2022 01:42:04 +0000
apertium-urd-hin | 0 | {linguistics} |
calculix-ccx-doc | 0 | {engineering,numericalcomputation,simulations} |
calculix-ccx-test | 0 | {numericalcomputation,simulations,engineering} |
+ cernlib | 0 | {highenergy-physics,physics} |
cernlib | 0 | {highenergy-physics-dev} |
cernlib | 0 | {highenergy-physics} |
- cernlib | 0 | {highenergy-physics,physics} |
ckon | 0 | {highenergy-physics-dev} |
clhep | 0 | {highenergy-physics-dev} |
coda | 0 | {meteorology-dev} |
@@ -252,8 +252,8 @@ Last-Update: Tue, 15 Mar 2022 01:42:04 +0000
python-aws-xray-sdk | 0 | {dataacquisition-dev} |
python-escript | 0 | {engineering,simulations,numericalcomputation} |
qrupdate | 0 | {mathematics-dev} |
- ros-metapackages | 0 | {robotics-dev} |
ros-metapackages | 0 | {robotics} |
+ ros-metapackages | 0 | {robotics-dev} |
ros-opencv-apps | 0 | {robotics} |
sagemath-database-combinatorial-designs | 0 | {mathematics} |
sagemath-database-conway-polynomials | 0 | {mathematics} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/5e886e72b76d8fb3a8fa4f08fdbbb2e1dbb713ce
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