Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
808a9bff by Andreas Tille at 2022-03-21T13:42:47+00:00
automatic update
- - - - -
3 changed files:
- debian-med-tests.txt
- debian-science-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,96 +1,93 @@
-Last-Update: Mon, 21 Mar 2022 01:42:04 +0000
+Last-Update: Mon, 21 Mar 2022 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 178 | {covid-19,imaging} |
- orthanc | 98 | {imaging,covid-19,practice} |
- orthanc-wsi | 46 | {his,laboratory,covid-19,oncology,practice,imaging} |
- amide | 27 | {imaging} |
- dicom3tools | 26 | {imaging} |
+ dcmtk | 180 | {covid-19,imaging} |
+ orthanc | 99 | {imaging,covid-19,practice} |
+ orthanc-wsi | 48 | {his,laboratory,covid-19,oncology,practice,imaging} |
+ amide | 26 | {imaging} |
+ dicom3tools | 25 | {imaging} |
dicomscope | 25 | {imaging} |
- dcm2niix | 19 | {imaging} |
+ dcm2niix | 20 | {imaging} |
orthanc-webviewer | 16 | {imaging} |
gnumed-server | 14 | {practice,covid-19} |
- openslide | 12 | {imaging} |
- openslide | 11 | {imaging-dev} |
- gdcm | 10 | {imaging-dev} |
+ openslide | 12 | {imaging-dev} |
+ gdcm | 11 | {imaging-dev} |
invesalius | 10 | {imaging} |
mrtrix3 | 10 | {imaging} |
+ openslide | 10 | {imaging} |
dicomnifti | 9 | {imaging} |
- gdcm | 9 | {covid-19,imaging} |
- minc-tools | 8 | {imaging} |
- biojava-live | 7 | {bio-dev} |
+ gdcm | 8 | {covid-19,imaging} |
libminc | 7 | {imaging-dev} |
+ minc-tools | 7 | {imaging} |
nifti2dicom | 7 | {imaging} |
orthanc-postgresql | 7 | {imaging} |
pixelmed | 7 | {imaging} |
salmon | 7 | {bio,covid-19} |
+ biojava-live | 6 | {bio-dev} |
nifti2dicom | 6 | {imaging} |
nifticlib | 6 | {imaging-dev} |
- obitools | 6 | {bio} |
orthanc-dicomweb | 6 | {covid-19,imaging} |
king | 5 | {imaging,typesetting} |
nifticlib | 5 | {imaging} |
+ obitools | 5 | {bio} |
oscar | 5 | {practice,tools,data} |
treeview | 5 | {bio-phylogeny,bio} |
getdata | 4 | {bio} |
- ghmm | 4 | {bio} |
jebl2 | 4 | {bio-dev} |
- jellyfish1 | 4 | {bio} |
librg-utils-perl | 4 | {bio} |
libsbml | 4 | {bio-dev} |
- nipype | 4 | {imaging-dev,imaging} |
orthanc-mysql | 4 | {imaging} |
adun.app | 3 | {bio} |
- bio-tradis | 3 | {bio-dev,bio} |
blimps | 3 | {bio} |
- clonalorigin | 3 | {bio} |
dicompyler | 3 | {oncology} |
+ ghmm | 3 | {bio} |
+ jellyfish1 | 3 | {bio} |
libdivsufsort | 3 | {bio-dev} |
- libncl | 3 | {bio} |
- mia | 3 | {imaging} |
+ nipype | 3 | {imaging-dev,imaging} |
orthanc-gdcm | 3 | {imaging} |
- plastimatch | 3 | {imaging} |
+ python-wdlparse | 3 | {bio-dev} |
sift | 3 | {bio} |
anfo | 2 | {bio,cloud} |
arden | 2 | {cloud,bio} |
atropos | 2 | {bio} |
bart-view | 2 | {imaging} |
beast-mcmc | 2 | {bio-phylogeny,bio} |
- bitseq | 2 | {bio} |
+ bio-tradis | 2 | {bio-dev,bio} |
canu | 2 | {bio} |
- cat-bat | 2 | {bio,covid-19} |
+ clonalorigin | 2 | {bio} |
cmtk | 2 | {imaging} |
elastix | 2 | {imaging} |
- embassy-domainatrix | 2 | {cloud,bio} |
embassy-domsearch | 2 | {bio,cloud} |
gatb-core | 2 | {bio} |
- gifticlib | 2 | {imaging-dev} |
htscodecs | 2 | {covid-19,bio-dev} |
lamarc | 2 | {bio} |
- mauve-aligner | 2 | {bio} |
+ libncl | 2 | {bio} |
melting | 2 | {bio,cloud} |
+ mia | 2 | {imaging} |
orthanc-python | 2 | {covid-19} |
+ plastimatch | 2 | {imaging} |
pymia | 2 | {imaging-dev} |
- python-wdlparse | 2 | {bio-dev} |
runcircos-gui | 2 | {bio} |
- stacks | 2 | {bio} |
staden | 2 | {bio} |
- tracetuner | 2 | {bio} |
zalign | 2 | {cloud,bio} |
assemblytics | 1 | {bio} |
bambamc | 1 | {bio-dev} |
+ bitseq | 1 | {bio} |
brig | 1 | {bio} |
+ cat-bat | 1 | {bio,covid-19} |
clonalframeml | 1 | {covid-19,bio} |
cufflinks | 1 | {bio,cloud} |
cutesv | 1 | {bio} |
delly | 1 | {covid-19,bio} |
dextractor | 1 | {bio,covid-19} |
+ embassy-domainatrix | 1 | {cloud,bio} |
embassy-domalign | 1 | {bio,cloud} |
emboss-explorer | 1 | {bio} |
emmax | 1 | {bio} |
emperor | 1 | {bio} |
fastml | 1 | {bio} |
+ gifticlib | 1 | {imaging-dev} |
hinge | 1 | {bio} |
intake | 1 | {bio,bio-dev} |
ipig | 1 | {bio} |
@@ -101,22 +98,21 @@ Last-Update: Mon, 21 Mar 2022 01:42:04 +0000
libgenome | 1 | {bio-dev} |
libpal-java | 1 | {bio-dev} |
libvistaio | 1 | {imaging-dev} |
+ mauve-aligner | 1 | {bio} |
metaphlan2 | 1 | {bio} |
mhap | 1 | {bio-ngs,bio} |
opencfu | 1 | {laboratory} |
opensurgsim | 1 | {imaging-dev} |
+ papyrus | 1 | {imaging-dev} |
phyutility | 1 | {bio,cloud} |
pigx-rnaseq | 1 | {covid-19,bio} |
- qcumber | 1 | {bio} |
rambo-k | 1 | {bio} |
- rdp-alignment | 1 | {bio} |
saint | 1 | {bio} |
sibsim4 | 1 | {cloud,bio} |
spread-phy | 1 | {bio-phylogeny,bio} |
- surankco | 1 | {bio} |
- tvc | 1 | {bio} |
+ stacks | 1 | {bio} |
+ tracetuner | 1 | {bio} |
varna | 1 | {bio} |
- varscan | 1 | {bio,covid-19} |
acedb | 0 | {cloud,bio} |
biojava4-live | 0 | {bio-dev} |
biomaj3-cli | 0 | {cloud} |
@@ -163,7 +159,6 @@ Last-Update: Mon, 21 Mar 2022 01:42:04 +0000
ncbi-vdb | 0 | {bio-dev} |
nifticlib | 0 | {imaging-dev} |
orthanc-imagej | 0 | {imaging} |
- papyrus | 0 | {imaging-dev} |
parallel-fastq-dump | 0 | {covid-19} |
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
@@ -177,6 +172,8 @@ Last-Update: Mon, 21 Mar 2022 01:42:04 +0000
pscan-chip | 0 | {bio} |
python-seqcluster | 0 | {bio} |
python-seqcluster | 0 | {covid-19,bio-dev} |
+ qcumber | 0 | {bio} |
+ rdp-alignment | 0 | {bio} |
rdp-classifier | 0 | {bio} |
resfinder-db | 0 | {bio} |
rtax | 0 | {bio,cloud} |
@@ -192,10 +189,13 @@ Last-Update: Mon, 21 Mar 2022 01:42:04 +0000
sprai | 0 | {bio} |
srf | 0 | {bio-dev} |
suitename | 0 | {bio} |
+ surankco | 0 | {bio} |
thesias | 0 | {bio,covid-19} |
tipp | 0 | {bio,covid-19} |
tophat-recondition | 0 | {bio,covid-19} |
trace2dbest | 0 | {bio} |
+ tvc | 0 | {bio} |
+ varscan | 0 | {bio,covid-19} |
vienna-rna | 0 | {bio,covid-19} |
xdffileio | 0 | {imaging-dev} |
xxsds-dynamic | 0 | {bio-dev} |
=====================================
debian-science-tests.txt
=====================================
@@ -1,65 +1,66 @@
-Last-Update: Mon, 21 Mar 2022 01:42:04 +0000
+Last-Update: Mon, 21 Mar 2022 13:42:05 +0000
Source | Vote | Tasks | Tags
-----------------------------------------+--------+----------------------------------------------------------------------------------+--------------------------------------------------------------------
- gts | 3087 | {viewing} |
- sympy | 1657 | {physics,nanoscale-physics} |
- suitesparse | 278 | {mathematics-dev,numericalcomputation} |
- spyder | 225 | {numericalcomputation} |
- armadillo | 202 | {mathematics-dev} |
- python-pyqtgraph | 140 | {viewing} |
- atlas | 88 | {mathematics-dev} |
- cypari2 | 57 | {mathematics-dev} |
+ gts | 3082 | {viewing} |
+ sympy | 1671 | {physics,nanoscale-physics} |
+ suitesparse | 276 | {mathematics-dev,numericalcomputation} |
+ spyder | 223 | {numericalcomputation} |
+ armadillo | 196 | {mathematics-dev} |
+ python-pyqtgraph | 141 | {viewing} |
+ atlas | 93 | {mathematics-dev} |
+ cypari2 | 54 | {mathematics-dev} |
arduino-mk | 50 | {robotics} |
- arpack | 49 | {mathematics-dev} |
- imview | 43 | {viewing} |
+ arpack | 48 | {mathematics-dev} |
+ imview | 47 | {viewing} |
pyzo | 43 | {numericalcomputation} |
- scalapack | 37 | {nanoscale-physics-dev} |
+ scalapack | 35 | {nanoscale-physics-dev} |
flintqs | 34 | {mathematics} |
rubiks | 34 | {geometry,mathematics} |
eclib | 33 | {mathematics} |
fftw | 29 | {physics-dev,meteorology-dev,mathematics-dev} |
- feedgnuplot | 23 | {viewing} |
+ feedgnuplot | 22 | {viewing} |
bossa | 21 | {devices} |
- geg | 21 | {viewing} |
+ cernlib | 21 | {highenergy-physics} |
nltk | 21 | {linguistics} |
sketch | 21 | {typesetting} |
- cernlib | 20 | {highenergy-physics} |
+ geg | 20 | {viewing} |
+ gts | 19 | {viewing-dev} |
ppl | 19 | {numericalcomputation} |
- gts | 18 | {viewing-dev} |
ntl | 18 | {mathematics-dev} |
guidata | 17 | {dataacquisition-dev} |
guiqwt | 17 | {numericalcomputation,viewing} |
- neuron | 16 | {neuroscience-modeling,highenergy-physics,simulations} |
+ neuron | 17 | {neuroscience-modeling,highenergy-physics,simulations} |
libmatio | 15 | {mathematics-dev} |
+ matlab-support | 14 | {mathematics,numericalcomputation} |
opencascade | 14 | {simulations} |
- auto-07p | 13 | {mathematics} |
cernlib | 13 | {highenergy-physics-dev} |
- flann | 13 | {mathematics-dev,engineering-dev} |
- matlab-support | 13 | {mathematics,numericalcomputation} |
- picosat | 13 | {logic} |
tango | 13 | {dataacquisition} |
+ auto-07p | 12 | {mathematics} |
+ flann | 12 | {mathematics-dev,engineering-dev} |
+ gfsview | 12 | {viewing} |
libm4ri | 12 | {mathematics-dev} |
- coinor-symphony | 11 | {numericalcomputation,logic,mathematics} |
- gfsview | 11 | {viewing} |
+ picosat | 12 | {logic} |
opticalraytracer | 11 | {physics} |
ros-ros-environment | 11 | {robotics-dev} |
+ vitables | 11 | {numericalcomputation} |
+ coinor-symphony | 10 | {numericalcomputation,logic,mathematics} |
form | 10 | {mathematics} |
mathgl | 10 | {viewing} |
neuron | 10 | {highenergy-physics-dev} |
- pcl | 10 | {robotics-dev} |
- ros-rosconsole | 10 | {robotics-dev} |
- urdfdom-headers | 10 | {robotics-dev} |
- vitables | 10 | {numericalcomputation} |
cliquer | 9 | {mathematics} |
lxi-tools | 9 | {engineering,dataacquisition} |
+ pcl | 9 | {robotics-dev} |
+ ros-rosconsole | 9 | {robotics-dev} |
tango | 9 | {dataacquisition} |
uctodata | 9 | {linguistics} |
+ urdfdom-headers | 9 | {robotics-dev} |
fftw | 8 | {meteorology-dev,physics-dev,mathematics-dev} |
rheolef | 8 | {mathematics} |
simbody | 8 | {robotics-dev} |
ucto | 8 | {linguistics} |
apophenia | 7 | {statistics} |
+ dune-uggrid | 7 | {mathematics-dev} |
eclib | 7 | {mathematics-dev} |
getdp | 7 | {engineering,mathematics,simulations} |
ipe-tools | 7 | {typesetting} |
@@ -68,9 +69,9 @@ Last-Update: Mon, 21 Mar 2022 01:42:04 +0000
muparser | 7 | {mathematics-dev} |
polylib | 7 | {mathematics} |
astk | 6 | {engineering} |
+ cimg | 6 | {imageanalysis-dev} | {x11::library}
code-saturne | 6 | {engineering-dev,mathematics-dev} |
coinmp | 6 | {logic,mathematics-dev,numericalcomputation} |
- dune-uggrid | 6 | {mathematics-dev} |
dxsamples | 6 | {nanoscale-physics} |
libitpp | 6 | {engineering-dev,mathematics-dev} |
libm4rie | 6 | {mathematics-dev} |
@@ -78,48 +79,46 @@ Last-Update: Mon, 21 Mar 2022 01:42:04 +0000
opencascade | 6 | {simulations} |
scram | 6 | {engineering} |
syrthes | 6 | {engineering} |
- cimg | 5 | {imageanalysis-dev} | {x11::library}
+ alberta | 5 | {engineering-dev} |
cliquer | 5 | {mathematics-dev} |
debian-science | 5 | {physics,nanoscale-physics,machine-learning,economics,mathematics} |
+ dune-istl | 5 | {mathematics-dev} |
iml | 5 | {mathematics-dev} |
ipe-tools | 5 | {typesetting} |
libbraiding | 5 | {mathematics-dev} |
libcgns | 5 | {engineering} |
libmatheval | 5 | {mathematics} |
lrcalc | 5 | {mathematics} |
+ neuron | 5 | {highenergy-physics-dev} |
openstereogram | 5 | {tools} |
- teem | 5 | {imageanalysis} |
toulbar2 | 5 | {logic,physics,mathematics,numericalcomputation} |
- alberta | 4 | {engineering-dev} |
cernlib | 4 | {highenergy-physics} |
coda | 4 | {meteorology} |
debian-science | 4 | {physics,nanoscale-physics,statistics,economics} |
debian-science | 4 | {neuroscience-cognitive,machine-learning} |
- dune-istl | 4 | {mathematics-dev} |
etsf-io | 4 | {nanoscale-physics,physics} |
gf2x | 4 | {mathematics-dev} |
- hpcc | 4 | {distributedcomputing,numericalcomputation} |
- jeuclid | 4 | {typesetting,viewing} |
libcgns | 4 | {engineering-dev} |
- libgetdata | 4 | {dataacquisition-dev} |
libhomfly | 4 | {mathematics-dev} |
- morse-simulator | 4 | {robotics} |
- neuron | 4 | {highenergy-physics-dev} |
newmat | 4 | {mathematics-dev} |
qd | 4 | {mathematics-dev} |
qwtplot3d | 4 | {viewing-dev} |
ratpoints | 4 | {mathematics-dev} |
taurus | 4 | {dataacquisition} |
+ teem | 4 | {imageanalysis} |
debian-science | 3 | {nanoscale-physics,machine-learning,physics,economics} |
dimbl | 3 | {linguistics} |
+ dune-localfunctions | 3 | {mathematics-dev} |
frog | 3 | {linguistics} |
+ hpcc | 3 | {distributedcomputing,numericalcomputation} |
irstlm | 3 | {linguistics} |
- jhdf | 3 | {engineering-dev} |
- jhdf | 3 | {engineering} |
+ jeuclid | 3 | {typesetting,viewing} |
+ libgetdata | 3 | {dataacquisition-dev} |
libgetdata | 3 | {dataacquisition} |
liblxi | 3 | {engineering-dev,dataacquisition-dev} |
libmatheval | 3 | {mathematics-dev} |
mbt | 3 | {linguistics} |
+ morse-simulator | 3 | {robotics} |
openmx | 3 | {nanoscale-physics,physics} |
optlang | 3 | {mathematics-dev} |
python-escript | 3 | {simulations,numericalcomputation,engineering} |
@@ -135,20 +134,20 @@ Last-Update: Mon, 21 Mar 2022 01:42:04 +0000
clipper | 2 | {nanoscale-physics-dev} |
coda | 2 | {meteorology-dev} |
code-saturne | 2 | {engineering-dev,mathematics-dev} |
- debian-science | 2 | {physics} |
- debian-science | 2 | {tools} |
debian-science | 2 | {electrophysiology} |
+ debian-science | 2 | {tools} |
debian-science | 2 | {psychophysics} |
- dune-localfunctions | 2 | {mathematics-dev} |
+ debian-science | 2 | {physics} |
dxflib | 2 | {engineering-dev} |
harp | 2 | {meteorology} |
+ jhdf | 2 | {engineering-dev} |
+ jhdf | 2 | {engineering} |
libccp4 | 2 | {nanoscale-physics-dev} |
liblbfgs | 2 | {mathematics-dev} |
libvigraimpex | 2 | {imageanalysis-dev,machine-learning} |
looptools | 2 | {highenergy-physics} |
looptools | 2 | {highenergy-physics-dev} |
mbtserver | 2 | {linguistics} |
- ompl | 2 | {robotics-dev} |
openctm | 2 | {physics-dev} |
openigtlink | 2 | {robotics-dev} |
psurface | 2 | {numericalcomputation} |
@@ -166,6 +165,8 @@ Last-Update: Mon, 21 Mar 2022 01:42:04 +0000
cvector | 1 | {mathematics-dev} |
debian-science | 1 | {electrophysiology} |
debian-science | 1 | {neuroscience-cognitive} |
+ dune-functions | 1 | {mathematics-dev} |
+ dune-typetree | 1 | {mathematics-dev} |
fastjet | 1 | {highenergy-physics-dev} |
frogdata | 1 | {linguistics} |
gemmlowp | 1 | {mathematics-dev} |
@@ -174,6 +175,7 @@ Last-Update: Mon, 21 Mar 2022 01:42:04 +0000
liborigin2 | 1 | {viewing-dev} |
mrmpi | 1 | {tools} |
neartree | 1 | {mathematics-dev,numericalcomputation} |
+ ompl | 1 | {robotics-dev} |
openturns | 1 | {engineering-dev,meteorology-dev,mathematics-dev} |
openturns | 1 | {statistics,meteorology-dev,mathematics-dev,mathematics,engineering,meteorology} |
psurface | 1 | {numericalcomputation} |
@@ -215,19 +217,17 @@ Last-Update: Mon, 21 Mar 2022 01:42:04 +0000
apertium-urd-hin | 0 | {linguistics} |
calculix-ccx-doc | 0 | {engineering,numericalcomputation,simulations} |
calculix-ccx-test | 0 | {numericalcomputation,simulations,engineering} |
- cernlib | 0 | {highenergy-physics,physics} |
cernlib | 0 | {highenergy-physics} |
cernlib | 0 | {highenergy-physics-dev} |
+ cernlib | 0 | {highenergy-physics,physics} |
ckon | 0 | {highenergy-physics-dev} |
clhep | 0 | {highenergy-physics-dev} |
coda | 0 | {meteorology-dev} |
code-saturne | 0 | {engineering} |
debian-science | 0 | {economics} |
debian-science | 0 | {nanoscale-physics-dev} |
- dune-functions | 0 | {mathematics-dev} |
dune-grid-glue | 0 | {mathematics-dev} |
dune-pdelab | 0 | {mathematics-dev} |
- dune-typetree | 0 | {mathematics-dev} |
etsf-io | 0 | {nanoscale-physics-dev} |
fastjet | 0 | {highenergy-physics-dev} |
glpk-java | 0 | {mathematics-dev} |
@@ -241,16 +241,16 @@ Last-Update: Mon, 21 Mar 2022 01:42:04 +0000
libxsmm | 0 | {mathematics-dev} |
looptools | 0 | {highenergy-physics-dev} |
mclibs | 0 | {highenergy-physics} |
- metis-edf | 0 | {engineering-dev} |
metis-edf | 0 | {numericalcomputation,engineering} |
+ metis-edf | 0 | {engineering-dev} |
ompl | 0 | {robotics} |
openturns | 0 | {meteorology-dev,engineering-dev,mathematics-dev} |
python-aws-xray-sdk | 0 | {dataacquisition-dev} |
python-escript | 0 | {engineering,simulations,numericalcomputation} |
qrupdate | 0 | {mathematics-dev} |
robot-testing-framework | 0 | {robotics-dev} |
- ros-metapackages | 0 | {robotics} |
ros-metapackages | 0 | {robotics-dev} |
+ ros-metapackages | 0 | {robotics} |
ros-opencv-apps | 0 | {robotics} |
sagemath-database-combinatorial-designs | 0 | {mathematics} |
sagemath-database-conway-polynomials | 0 | {mathematics} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/808a9bffe486180cd19812c1f66ac10f17c97cea
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