Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
e08b0849 by Andreas Tille at 2022-03-23T13:42:19+00:00
automatic update
- - - - -
3 changed files:
- debian-med-tests.txt
- debian-science-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,121 +1,146 @@
-Last-Update: Wed, 23 Mar 2022 01:42:04 +0000
+Last-Update: Wed, 23 Mar 2022 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 180 | {covid-19,imaging} |
+ dcmtk | 182 | {covid-19,imaging} |
orthanc | 98 | {imaging,covid-19,practice} |
orthanc-wsi | 48 | {his,laboratory,covid-19,oncology,practice,imaging} |
amide | 24 | {imaging} |
- dicom3tools | 24 | {imaging} |
- dicomscope | 23 | {imaging} |
- dcm2niix | 20 | {imaging} |
+ dicomscope | 24 | {imaging} |
+ dicom3tools | 22 | {imaging} |
+ dcm2niix | 21 | {imaging} |
orthanc-webviewer | 15 | {imaging} |
gnumed-server | 14 | {practice,covid-19} |
- gdcm | 11 | {imaging-dev} |
+ gdcm | 10 | {imaging-dev} |
invesalius | 10 | {imaging} |
openslide | 10 | {imaging-dev} |
- dicomnifti | 9 | {imaging} |
mrtrix3 | 9 | {imaging} |
openslide | 9 | {imaging} |
- gdcm | 8 | {covid-19,imaging} |
+ dicomnifti | 8 | {imaging} |
libminc | 7 | {imaging-dev} |
- minc-tools | 7 | {imaging} |
- nifti2dicom | 7 | {imaging} |
pixelmed | 7 | {imaging} |
+ salmon | 7 | {bio,covid-19} |
biojava-live | 6 | {bio-dev} |
+ gdcm | 6 | {covid-19,imaging} |
+ librg-utils-perl | 6 | {bio} |
+ minc-tools | 6 | {imaging} |
nifti2dicom | 6 | {imaging} |
nifticlib | 6 | {imaging-dev} |
+ obitools | 6 | {bio} |
orthanc-postgresql | 6 | {imaging} |
- salmon | 6 | {bio,covid-19} |
+ treeview | 6 | {bio-phylogeny,bio} |
+ adun.app | 5 | {bio} |
+ jebl2 | 5 | {bio-dev} |
king | 5 | {imaging,typesetting} |
- librg-utils-perl | 5 | {bio} |
- nifticlib | 5 | {imaging} |
- obitools | 5 | {bio} |
+ nifti2dicom | 5 | {imaging} |
orthanc-dicomweb | 5 | {covid-19,imaging} |
- treeview | 5 | {bio-phylogeny,bio} |
getdata | 4 | {bio} |
- jebl2 | 4 | {bio-dev} |
+ ghmm | 4 | {bio} |
+ jellyfish1 | 4 | {bio} |
libsbml | 4 | {bio-dev} |
+ nifticlib | 4 | {imaging} |
nipype | 4 | {imaging-dev,imaging} |
oscar | 4 | {practice,tools,data} |
- adun.app | 3 | {bio} |
+ python-wdlparse | 4 | {bio-dev} |
+ anfo | 3 | {bio,cloud} |
+ arden | 3 | {cloud,bio} |
+ atropos | 3 | {bio} |
+ beast-mcmc | 3 | {bio-phylogeny,bio} |
+ bio-tradis | 3 | {bio-dev,bio} |
blimps | 3 | {bio} |
+ canu | 3 | {bio} |
+ clonalorigin | 3 | {bio} |
dicompyler | 3 | {oncology} |
- ghmm | 3 | {bio} |
- jellyfish1 | 3 | {bio} |
+ embassy-domsearch | 3 | {bio,cloud} |
+ gatb-core | 3 | {bio} |
+ lamarc | 3 | {bio} |
+ libncl | 3 | {bio} |
+ melting | 3 | {bio,cloud} |
orthanc-gdcm | 3 | {imaging} |
orthanc-mysql | 3 | {imaging} |
- python-wdlparse | 3 | {bio-dev} |
+ runcircos-gui | 3 | {bio} |
sift | 3 | {bio} |
- anfo | 2 | {bio,cloud} |
- arden | 2 | {cloud,bio} |
- atropos | 2 | {bio} |
+ staden | 3 | {bio} |
+ zalign | 3 | {cloud,bio} |
+ assemblytics | 2 | {bio} |
bart-view | 2 | {imaging} |
- beast-mcmc | 2 | {bio-phylogeny,bio} |
- bio-tradis | 2 | {bio-dev,bio} |
- canu | 2 | {bio} |
- clonalorigin | 2 | {bio} |
+ bitseq | 2 | {bio} |
+ brig | 2 | {bio} |
+ cat-bat | 2 | {bio,covid-19} |
+ clonalframeml | 2 | {covid-19,bio} |
cmtk | 2 | {imaging} |
+ delly | 2 | {covid-19,bio} |
+ dextractor | 2 | {bio,covid-19} |
elastix | 2 | {imaging} |
- embassy-domsearch | 2 | {bio,cloud} |
- gatb-core | 2 | {bio} |
+ embassy-domainatrix | 2 | {cloud,bio} |
+ embassy-domalign | 2 | {bio,cloud} |
+ emmax | 2 | {bio} |
+ fastml | 2 | {bio} |
+ hinge | 2 | {bio} |
htscodecs | 2 | {covid-19,bio-dev} |
- lamarc | 2 | {bio} |
+ ipig | 2 | {bio} |
+ jmodeltest | 2 | {bio,bio-phylogeny} |
+ kmerresistance | 2 | {bio} |
libdivsufsort | 2 | {bio-dev} |
- libncl | 2 | {bio} |
- melting | 2 | {bio,cloud} |
+ libpal-java | 2 | {bio-dev} |
+ mauve-aligner | 2 | {bio} |
+ metaphlan2 | 2 | {bio} |
+ mhap | 2 | {bio-ngs,bio} |
mia | 2 | {imaging} |
orthanc-python | 2 | {covid-19} |
+ phyutility | 2 | {bio,cloud} |
+ pigx-rnaseq | 2 | {covid-19,bio} |
plastimatch | 2 | {imaging} |
pymia | 2 | {imaging-dev} |
- runcircos-gui | 2 | {bio} |
- staden | 2 | {bio} |
- zalign | 2 | {cloud,bio} |
- assemblytics | 1 | {bio} |
- bitseq | 1 | {bio} |
- brig | 1 | {bio} |
- cat-bat | 1 | {bio,covid-19} |
- clonalframeml | 1 | {covid-19,bio} |
+ rambo-k | 2 | {bio} |
+ saint | 2 | {bio} |
+ sibsim4 | 2 | {cloud,bio} |
+ spread-phy | 2 | {bio-phylogeny,bio} |
+ stacks | 2 | {bio} |
+ tracetuner | 2 | {bio} |
+ varna | 2 | {bio} |
+ biomaj3-cli | 1 | {cloud} |
cufflinks | 1 | {bio,cloud} |
cutesv | 1 | {bio} |
- delly | 1 | {covid-19,bio} |
- dextractor | 1 | {bio,covid-19} |
- embassy-domainatrix | 1 | {cloud,bio} |
- embassy-domalign | 1 | {bio,cloud} |
emboss-explorer | 1 | {bio} |
- emmax | 1 | {bio} |
emperor | 1 | {bio} |
- fastml | 1 | {bio} |
gifticlib | 1 | {imaging-dev} |
- hinge | 1 | {bio} |
intake | 1 | {bio,bio-dev} |
- ipig | 1 | {bio} |
- jmodeltest | 1 | {bio,bio-phylogeny} |
- kmerresistance | 1 | {bio} |
libbio-mage-utils-perl | 1 | {bio-dev} |
libctapimkt | 1 | {practice} |
libgenome | 1 | {bio-dev} |
- libpal-java | 1 | {bio-dev} |
+ librdp-taxonomy-tree-java | 1 | {bio-dev} |
libvistaio | 1 | {imaging-dev} |
- mauve-aligner | 1 | {bio} |
- metaphlan2 | 1 | {bio} |
- mhap | 1 | {bio-ngs,bio} |
+ microbegps | 1 | {bio} |
opencfu | 1 | {laboratory} |
opensurgsim | 1 | {imaging-dev} |
papyrus | 1 | {imaging-dev} |
- phyutility | 1 | {bio,cloud} |
- pigx-rnaseq | 1 | {covid-19,bio} |
- rambo-k | 1 | {bio} |
- saint | 1 | {bio} |
- sibsim4 | 1 | {cloud,bio} |
- spread-phy | 1 | {bio-phylogeny,bio} |
- stacks | 1 | {bio} |
- tracetuner | 1 | {bio} |
- varna | 1 | {bio} |
+ piler | 1 | {bio} |
+ pique | 1 | {bio} |
+ placnet | 1 | {bio} |
+ plasmidid | 1 | {covid-19,bio} |
+ plasmidseeker | 1 | {bio} |
+ pplacer | 1 | {covid-19,bio-phylogeny,bio} |
+ proalign | 1 | {bio-phylogeny,bio} |
+ pscan-chip | 1 | {bio} |
+ qcumber | 1 | {bio} |
+ rdp-alignment | 1 | {bio} |
+ rdp-classifier | 1 | {bio} |
+ rtax | 1 | {bio,cloud} |
+ sga | 1 | {bio} |
+ skesa | 1 | {bio} |
+ soapaligner | 1 | {bio} |
+ soapsnp | 1 | {bio} |
+ sprai | 1 | {bio} |
+ suitename | 1 | {bio} |
+ surankco | 1 | {bio} |
+ thesias | 1 | {bio,covid-19} |
+ tophat-recondition | 1 | {bio,covid-19} |
+ trace2dbest | 1 | {bio} |
+ tvc | 1 | {bio} |
acedb | 0 | {cloud,bio} |
bambamc | 0 | {bio-dev} |
biojava4-live | 0 | {bio-dev} |
- biomaj3-cli | 0 | {cloud} |
biosyntax | 0 | {bio} |
bmtk | 0 | {psychology} |
camp | 0 | {imaging-dev} |
@@ -144,7 +169,6 @@ Last-Update: Wed, 23 Mar 2022 01:42:04 +0000
libncl | 0 | {bio-dev} |
libpsortb | 0 | {bio-dev} |
libqes | 0 | {bio-dev} |
- librdp-taxonomy-tree-java | 0 | {bio-dev} |
libseqlib | 0 | {bio-dev} |
libstatgen | 0 | {bio-dev} |
libxdf | 0 | {imaging-dev} |
@@ -154,7 +178,6 @@ Last-Update: Wed, 23 Mar 2022 01:42:04 +0000
metastudent-data-2 | 0 | {bio} |
mia | 0 | {imaging-dev} |
miaviewit | 0 | {imaging-dev} |
- microbegps | 0 | {bio} |
milib | 0 | {bio-dev,covid-19} |
ncbi-vdb | 0 | {bio-dev} |
nifticlib | 0 | {imaging-dev} |
@@ -162,39 +185,16 @@ Last-Update: Wed, 23 Mar 2022 01:42:04 +0000
parallel-fastq-dump | 0 | {covid-19} |
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
- piler | 0 | {bio} |
- pique | 0 | {bio} |
- placnet | 0 | {bio} |
- plasmidid | 0 | {covid-19,bio} |
- plasmidseeker | 0 | {bio} |
- pplacer | 0 | {covid-19,bio-phylogeny,bio} |
- proalign | 0 | {bio-phylogeny,bio} |
- pscan-chip | 0 | {bio} |
python-seqcluster | 0 | {covid-19,bio-dev} |
python-seqcluster | 0 | {bio} |
- qcumber | 0 | {bio} |
- rdp-alignment | 0 | {bio} |
- rdp-classifier | 0 | {bio} |
resfinder-db | 0 | {bio} |
- rtax | 0 | {bio,cloud} |
sbmltoolbox | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
- sga | 0 | {bio} |
sight | 0 | {imaging-dev} |
simpleitk | 0 | {imaging-dev} |
- skesa | 0 | {bio} |
smrtanalysis | 0 | {covid-19,bio} |
- soapaligner | 0 | {bio} |
- soapsnp | 0 | {bio} |
- sprai | 0 | {bio} |
srf | 0 | {bio-dev} |
- suitename | 0 | {bio} |
- surankco | 0 | {bio} |
- thesias | 0 | {bio,covid-19} |
tipp | 0 | {bio,covid-19} |
- tophat-recondition | 0 | {bio,covid-19} |
- trace2dbest | 0 | {bio} |
- tvc | 0 | {bio} |
varscan | 0 | {bio,covid-19} |
vienna-rna | 0 | {bio,covid-19} |
xdffileio | 0 | {imaging-dev} |
=====================================
debian-science-tests.txt
=====================================
@@ -1,53 +1,53 @@
-Last-Update: Wed, 23 Mar 2022 01:42:04 +0000
+Last-Update: Wed, 23 Mar 2022 13:42:04 +0000
Source | Vote | Tasks | Tags
-----------------------------------------+--------+----------------------------------------------------------------------------------+--------------------------------------------------------------------
- gts | 3061 | {viewing} |
- sympy | 1685 | {physics,nanoscale-physics} |
- suitesparse | 262 | {mathematics-dev,numericalcomputation} |
- spyder | 225 | {numericalcomputation} |
- armadillo | 200 | {mathematics-dev} |
- python-pyqtgraph | 141 | {viewing} |
- atlas | 91 | {mathematics-dev} |
- cypari2 | 56 | {mathematics-dev} |
- arduino-mk | 50 | {robotics} |
+ gts | 3085 | {viewing} |
+ sympy | 1728 | {physics,nanoscale-physics} |
+ suitesparse | 258 | {mathematics-dev,numericalcomputation} |
+ spyder | 229 | {numericalcomputation} |
+ armadillo | 197 | {mathematics-dev} |
+ python-pyqtgraph | 138 | {viewing} |
+ atlas | 92 | {mathematics-dev} |
+ cypari2 | 55 | {mathematics-dev} |
+ arduino-mk | 52 | {robotics} |
arpack | 47 | {mathematics-dev} |
pyzo | 45 | {numericalcomputation} |
- imview | 44 | {viewing} |
+ imview | 41 | {viewing} |
+ fftw | 35 | {physics-dev,meteorology-dev,mathematics-dev} |
flintqs | 34 | {mathematics} |
rubiks | 34 | {geometry,mathematics} |
eclib | 33 | {mathematics} |
- fftw | 33 | {physics-dev,meteorology-dev,mathematics-dev} |
feedgnuplot | 24 | {viewing} |
- bossa | 22 | {devices} |
- scalapack | 22 | {nanoscale-physics-dev} |
+ bossa | 23 | {devices} |
+ sketch | 22 | {typesetting} |
cernlib | 21 | {highenergy-physics} |
- sketch | 21 | {typesetting} |
nltk | 20 | {linguistics} |
- geg | 19 | {viewing} |
gts | 19 | {viewing-dev} |
- ppl | 19 | {numericalcomputation} |
+ geg | 18 | {viewing} |
guidata | 18 | {dataacquisition-dev} |
guiqwt | 18 | {numericalcomputation,viewing} |
- neuron | 17 | {neuroscience-modeling,highenergy-physics,simulations} |
+ ppl | 18 | {numericalcomputation} |
ntl | 17 | {mathematics-dev} |
+ neuron | 16 | {neuroscience-modeling,highenergy-physics,simulations} |
+ scalapack | 16 | {nanoscale-physics-dev} |
libmatio | 14 | {mathematics-dev} |
matlab-support | 14 | {mathematics,numericalcomputation} |
cernlib | 13 | {highenergy-physics-dev} |
+ fftw | 13 | {meteorology-dev,physics-dev,mathematics-dev} |
+ gfsview | 13 | {viewing} |
opencascade | 13 | {simulations} |
tango | 13 | {dataacquisition} |
vitables | 13 | {numericalcomputation} |
- auto-07p | 12 | {mathematics} |
flann | 12 | {mathematics-dev,engineering-dev} |
- gfsview | 12 | {viewing} |
+ mathgl | 12 | {viewing} |
coinor-symphony | 11 | {numericalcomputation,logic,mathematics} |
- fftw | 11 | {meteorology-dev,physics-dev,mathematics-dev} |
libm4ri | 11 | {mathematics-dev} |
opticalraytracer | 11 | {physics} |
picosat | 11 | {logic} |
ros-ros-environment | 11 | {robotics-dev} |
+ auto-07p | 10 | {mathematics} |
form | 10 | {mathematics} |
- mathgl | 10 | {viewing} |
neuron | 10 | {highenergy-physics-dev} |
cliquer | 9 | {mathematics} |
pcl | 9 | {robotics-dev} |
@@ -74,6 +74,7 @@ Last-Update: Wed, 23 Mar 2022 01:42:04 +0000
dxsamples | 6 | {nanoscale-physics} |
eclib | 6 | {mathematics-dev} |
libm4rie | 6 | {mathematics-dev} |
+ libmatheval | 6 | {mathematics} |
libzn-poly | 6 | {mathematics-dev} |
lrcalc | 6 | {mathematics-dev} |
opencascade | 6 | {simulations} |
@@ -88,7 +89,6 @@ Last-Update: Wed, 23 Mar 2022 01:42:04 +0000
ipe-tools | 5 | {typesetting} |
libbraiding | 5 | {mathematics-dev} |
libcgns | 5 | {engineering} |
- libmatheval | 5 | {mathematics} |
lrcalc | 5 | {mathematics} |
neuron | 5 | {highenergy-physics-dev} |
openstereogram | 5 | {tools} |
@@ -113,8 +113,8 @@ Last-Update: Wed, 23 Mar 2022 01:42:04 +0000
hpcc | 3 | {distributedcomputing,numericalcomputation} |
irstlm | 3 | {linguistics} |
jeuclid | 3 | {typesetting,viewing} |
- libgetdata | 3 | {dataacquisition} |
libgetdata | 3 | {dataacquisition-dev} |
+ libgetdata | 3 | {dataacquisition} |
liblxi | 3 | {engineering-dev,dataacquisition-dev} |
libmatheval | 3 | {mathematics-dev} |
mbt | 3 | {linguistics} |
@@ -122,7 +122,6 @@ Last-Update: Wed, 23 Mar 2022 01:42:04 +0000
openmx | 3 | {nanoscale-physics,physics} |
optlang | 3 | {mathematics-dev} |
psurface | 3 | {numericalcomputation} |
- python-escript | 3 | {simulations,numericalcomputation,engineering} |
sardana | 3 | {dataacquisition} |
sollya | 3 | {mathematics-dev} |
tango | 3 | {dataacquisition-dev} |
@@ -135,23 +134,23 @@ Last-Update: Wed, 23 Mar 2022 01:42:04 +0000
clipper | 2 | {nanoscale-physics-dev} |
coda | 2 | {meteorology-dev} |
code-saturne | 2 | {engineering-dev,mathematics-dev} |
- debian-science | 2 | {psychophysics} |
debian-science | 2 | {tools} |
- debian-science | 2 | {physics} |
debian-science | 2 | {electrophysiology} |
+ debian-science | 2 | {physics} |
dxflib | 2 | {engineering-dev} |
harp | 2 | {meteorology} |
- jhdf | 2 | {engineering} |
jhdf | 2 | {engineering-dev} |
+ jhdf | 2 | {engineering} |
libccp4 | 2 | {nanoscale-physics-dev} |
liblbfgs | 2 | {mathematics-dev} |
libvigraimpex | 2 | {imageanalysis-dev,machine-learning} |
- looptools | 2 | {highenergy-physics} |
looptools | 2 | {highenergy-physics-dev} |
+ looptools | 2 | {highenergy-physics} |
mbtserver | 2 | {linguistics} |
openctm | 2 | {physics-dev} |
openigtlink | 2 | {robotics-dev} |
pynac | 2 | {mathematics-dev} |
+ python-escript | 2 | {simulations,numericalcomputation,engineering} |
sparskit | 2 | {mathematics-dev} |
tango | 2 | {dataacquisition-dev} |
timbl | 2 | {linguistics} |
@@ -163,8 +162,8 @@ Last-Update: Wed, 23 Mar 2022 01:42:04 +0000
collada-dom | 1 | {viewing-dev} |
cqrlib | 1 | {mathematics-dev} |
cvector | 1 | {mathematics-dev} |
- debian-science | 1 | {electrophysiology} |
- debian-science | 1 | {neuroscience-cognitive} |
+ debian-science | 1 | {psychophysics} |
+ debian-science | 1 | {economics} |
dune-functions | 1 | {mathematics-dev} |
dune-typetree | 1 | {mathematics-dev} |
fastjet | 1 | {highenergy-physics-dev} |
@@ -217,15 +216,16 @@ Last-Update: Wed, 23 Mar 2022 01:42:04 +0000
apertium-urd-hin | 0 | {linguistics} |
calculix-ccx-doc | 0 | {engineering,numericalcomputation,simulations} |
calculix-ccx-test | 0 | {numericalcomputation,simulations,engineering} |
+ cernlib | 0 | {highenergy-physics,physics} |
cernlib | 0 | {highenergy-physics-dev} |
cernlib | 0 | {highenergy-physics} |
- cernlib | 0 | {highenergy-physics,physics} |
ckon | 0 | {highenergy-physics-dev} |
clhep | 0 | {highenergy-physics-dev} |
coda | 0 | {meteorology-dev} |
code-saturne | 0 | {engineering} |
- debian-science | 0 | {economics} |
+ debian-science | 0 | {neuroscience-cognitive} |
debian-science | 0 | {nanoscale-physics-dev} |
+ debian-science | 0 | {electrophysiology} |
dune-grid-glue | 0 | {mathematics-dev} |
dune-pdelab | 0 | {mathematics-dev} |
etsf-io | 0 | {nanoscale-physics-dev} |
@@ -241,16 +241,16 @@ Last-Update: Wed, 23 Mar 2022 01:42:04 +0000
libxsmm | 0 | {mathematics-dev} |
looptools | 0 | {highenergy-physics-dev} |
mclibs | 0 | {highenergy-physics} |
- metis-edf | 0 | {engineering-dev} |
metis-edf | 0 | {numericalcomputation,engineering} |
+ metis-edf | 0 | {engineering-dev} |
ompl | 0 | {robotics} |
openturns | 0 | {meteorology-dev,engineering-dev,mathematics-dev} |
python-aws-xray-sdk | 0 | {dataacquisition-dev} |
python-escript | 0 | {engineering,simulations,numericalcomputation} |
qrupdate | 0 | {mathematics-dev} |
robot-testing-framework | 0 | {robotics-dev} |
- ros-metapackages | 0 | {robotics} |
ros-metapackages | 0 | {robotics-dev} |
+ ros-metapackages | 0 | {robotics} |
ros-opencv-apps | 0 | {robotics} |
sagemath-database-combinatorial-designs | 0 | {mathematics} |
sagemath-database-conway-polynomials | 0 | {mathematics} |
@@ -259,8 +259,8 @@ Last-Update: Wed, 23 Mar 2022 01:42:04 +0000
sagemath-database-polytopes | 0 | {mathematics} |
siscone | 0 | {highenergy-physics-dev} |
slicot | 0 | {robotics-dev,engineering-dev} |
- ssm | 0 | {nanoscale-physics} |
ssm | 0 | {nanoscale-physics-dev} |
+ ssm | 0 | {nanoscale-physics} |
tachyon | 0 | {mathematics} |
tango | 0 | {dataacquisition} |
triangle | 0 | {physics-dev} |
=====================================
outdated_med-packages.txt
=====================================
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