Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
2299ae86 by Andreas Tille at 2022-03-31T13:42:22+00:00
automatic update
- - - - -
3 changed files:
- debian-med-tests.txt
- debian-science-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,59 +1,59 @@
-Last-Update: Thu, 31 Mar 2022 01:42:04 +0000
+Last-Update: Thu, 31 Mar 2022 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 171 | {covid-19,imaging} |
- orthanc | 91 | {imaging,covid-19,practice} |
- orthanc-wsi | 44 | {his,laboratory,covid-19,oncology,practice,imaging} |
+ dcmtk | 170 | {covid-19,imaging} |
+ orthanc | 89 | {imaging,covid-19,practice} |
+ orthanc-wsi | 43 | {his,laboratory,covid-19,oncology,practice,imaging} |
+ dicomscope | 27 | {imaging} |
dicom3tools | 26 | {imaging} |
- dicomscope | 26 | {imaging} |
- amide | 23 | {imaging} |
- dcm2niix | 21 | {imaging} |
- orthanc-webviewer | 15 | {imaging} |
+ amide | 24 | {imaging} |
+ dcm2niix | 22 | {imaging} |
gnumed-server | 13 | {practice,covid-19} |
+ orthanc-webviewer | 13 | {imaging} |
+ mrtrix3 | 11 | {imaging} |
openslide | 11 | {imaging} |
- mrtrix3 | 10 | {imaging} |
+ dicomnifti | 10 | {imaging} |
openslide | 10 | {imaging-dev} |
- dicomnifti | 9 | {imaging} |
gdcm | 8 | {imaging-dev} |
invesalius | 8 | {imaging} |
+ nifti2dicom | 8 | {imaging} |
libminc | 7 | {imaging-dev} |
nifti2dicom | 7 | {imaging} |
gdcm | 6 | {covid-19,imaging} |
librg-utils-perl | 6 | {bio} |
minc-tools | 6 | {imaging} |
- orthanc-postgresql | 6 | {imaging} |
- treeview | 6 | {bio-phylogeny,bio} |
+ pixelmed | 6 | {imaging} |
biojava-live | 5 | {bio-dev} |
- nifticlib | 5 | {imaging-dev} |
nifticlib | 5 | {imaging} |
+ nifticlib | 5 | {imaging-dev} |
nipype | 5 | {imaging-dev,imaging} |
obitools | 5 | {bio} |
orthanc-dicomweb | 5 | {covid-19,imaging} |
- pixelmed | 5 | {imaging} |
salmon | 5 | {bio,covid-19} |
+ treeview | 5 | {bio-phylogeny,bio} |
adun.app | 4 | {bio} |
+ dicompyler | 4 | {oncology} |
getdata | 4 | {bio} |
- jebl2 | 4 | {bio-dev} |
+ orthanc-postgresql | 4 | {imaging} |
oscar | 4 | {practice,tools,data} |
python-wdlparse | 4 | {bio-dev} |
bio-tradis | 3 | {bio-dev,bio} |
blimps | 3 | {bio} |
- dicompyler | 3 | {oncology} |
ghmm | 3 | {bio} |
+ jebl2 | 3 | {bio-dev} |
king | 3 | {imaging,typesetting} |
orthanc-gdcm | 3 | {imaging} |
- orthanc-mysql | 3 | {imaging} |
+ plastimatch | 3 | {imaging} |
sift | 3 | {bio} |
- staden | 3 | {bio} |
anfo | 2 | {bio,cloud} |
arden | 2 | {cloud,bio} |
atropos | 2 | {bio} |
bart-view | 2 | {imaging} |
- beast-mcmc | 2 | {bio-phylogeny,bio} |
canu | 2 | {bio} |
cat-bat | 2 | {bio,covid-19} |
clonalorigin | 2 | {bio} |
+ cmtk | 2 | {imaging} |
embassy-domsearch | 2 | {bio,cloud} |
gatb-core | 2 | {bio} |
lamarc | 2 | {bio} |
@@ -64,10 +64,9 @@ Last-Update: Thu, 31 Mar 2022 01:42:04 +0000
melting | 2 | {bio,cloud} |
mia | 2 | {imaging} |
opencfu | 2 | {laboratory} |
- orthanc-python | 2 | {covid-19} |
+ orthanc-mysql | 2 | {imaging} |
phyutility | 2 | {bio,cloud} |
pigx-rnaseq | 2 | {covid-19,bio} |
- plastimatch | 2 | {imaging} |
pymia | 2 | {imaging-dev} |
rambo-k | 2 | {bio} |
runcircos-gui | 2 | {bio} |
@@ -75,12 +74,13 @@ Last-Update: Thu, 31 Mar 2022 01:42:04 +0000
sibsim4 | 2 | {cloud,bio} |
spread-phy | 2 | {bio-phylogeny,bio} |
stacks | 2 | {bio} |
+ staden | 2 | {bio} |
zalign | 2 | {cloud,bio} |
assemblytics | 1 | {bio} |
+ beast-mcmc | 1 | {bio-phylogeny,bio} |
bitseq | 1 | {bio} |
brig | 1 | {bio} |
clonalframeml | 1 | {covid-19,bio} |
- cmtk | 1 | {imaging} |
cutesv | 1 | {bio} |
delly | 1 | {covid-19,bio} |
dextractor | 1 | {bio,covid-19} |
@@ -104,6 +104,7 @@ Last-Update: Thu, 31 Mar 2022 01:42:04 +0000
mauve-aligner | 1 | {bio} |
metaphlan2 | 1 | {bio} |
mhap | 1 | {bio-ngs,bio} |
+ orthanc-python | 1 | {covid-19} |
papyrus | 1 | {imaging-dev} |
piler | 1 | {bio} |
pique | 1 | {bio} |
@@ -182,8 +183,8 @@ Last-Update: Thu, 31 Mar 2022 01:42:04 +0000
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
plasmidid | 0 | {covid-19,bio} |
- python-seqcluster | 0 | {covid-19,bio-dev} |
python-seqcluster | 0 | {bio} |
+ python-seqcluster | 0 | {covid-19,bio-dev} |
resfinder-db | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
@@ -199,5 +200,5 @@ Last-Update: Thu, 31 Mar 2022 01:42:04 +0000
libmaus2 | -1 | {covid-19,bio-dev} |
mssstest | -1 | {tools} |
rockhopper | -1 | {bio} |
-(227 rows)
+(228 rows)
=====================================
debian-science-tests.txt
=====================================
@@ -1,94 +1,94 @@
-Last-Update: Thu, 31 Mar 2022 01:42:04 +0000
+Last-Update: Thu, 31 Mar 2022 13:42:05 +0000
Source | Vote | Tasks | Tags
-----------------------------------------+--------+----------------------------------------------------------------------------------+--------------------------------------------------------------------
- gts | 3064 | {viewing} |
- sympy | 1851 | {physics,nanoscale-physics} |
- suitesparse | 245 | {mathematics-dev,numericalcomputation} |
- spyder | 235 | {numericalcomputation} |
- armadillo | 210 | {mathematics-dev} |
- python-pyqtgraph | 148 | {viewing} |
- atlas | 94 | {mathematics-dev} |
+ gts | 3062 | {viewing} |
+ sympy | 1862 | {physics,nanoscale-physics} |
+ suitesparse | 244 | {mathematics-dev,numericalcomputation} |
+ spyder | 238 | {numericalcomputation} |
+ armadillo | 211 | {mathematics-dev} |
+ python-pyqtgraph | 151 | {viewing} |
+ atlas | 93 | {mathematics-dev} |
arpack | 57 | {mathematics-dev} |
- arduino-mk | 52 | {robotics} |
- cypari2 | 50 | {mathematics-dev} |
- pyzo | 48 | {numericalcomputation} |
- imview | 43 | {viewing} |
+ cypari2 | 53 | {mathematics-dev} |
+ arduino-mk | 51 | {robotics} |
+ pyzo | 49 | {numericalcomputation} |
+ imview | 44 | {viewing} |
rubiks | 41 | {geometry,mathematics} |
fftw | 40 | {physics-dev,meteorology-dev,mathematics-dev} |
- eclib | 38 | {mathematics} |
- flintqs | 37 | {mathematics} |
- sketch | 24 | {typesetting} |
- bossa | 23 | {devices} |
- cernlib | 23 | {highenergy-physics} |
+ eclib | 36 | {mathematics} |
+ flintqs | 35 | {mathematics} |
+ cernlib | 25 | {highenergy-physics} |
+ sketch | 25 | {typesetting} |
+ bossa | 24 | {devices} |
feedgnuplot | 23 | {viewing} |
gts | 20 | {viewing-dev} |
+ cernlib | 18 | {highenergy-physics-dev} |
+ geg | 18 | {viewing} |
nltk | 18 | {linguistics} |
- ppl | 18 | {numericalcomputation} |
fftw | 17 | {meteorology-dev,physics-dev,mathematics-dev} |
- geg | 17 | {viewing} |
- cernlib | 16 | {highenergy-physics-dev} |
- guidata | 16 | {dataacquisition-dev} |
- guiqwt | 16 | {numericalcomputation,viewing} |
+ guidata | 17 | {dataacquisition-dev} |
+ guiqwt | 17 | {numericalcomputation,viewing} |
neuron | 16 | {neuroscience-modeling,highenergy-physics,simulations} |
+ vitables | 16 | {numericalcomputation} |
+ coinor-symphony | 15 | {numericalcomputation,logic,mathematics} |
+ gfsview | 15 | {viewing} |
ntl | 15 | {mathematics-dev} |
- vitables | 15 | {numericalcomputation} |
- coinor-symphony | 14 | {numericalcomputation,logic,mathematics} |
- gfsview | 14 | {viewing} |
+ ppl | 15 | {numericalcomputation} |
+ mathgl | 14 | {viewing} |
libmatio | 13 | {mathematics-dev} |
- mathgl | 13 | {viewing} |
opencascade | 13 | {simulations} |
+ opticalraytracer | 13 | {physics} |
flann | 12 | {mathematics-dev,engineering-dev} |
form | 12 | {mathematics} |
matlab-support | 12 | {mathematics,numericalcomputation} |
- opticalraytracer | 12 | {physics} |
tango | 12 | {dataacquisition} |
rheolef | 11 | {mathematics} |
- ros-ros-environment | 11 | {robotics-dev} |
auto-07p | 10 | {mathematics} |
libm4ri | 10 | {mathematics-dev} |
+ ros-ros-environment | 10 | {robotics-dev} |
scalapack | 10 | {nanoscale-physics-dev} |
tango | 10 | {dataacquisition} |
- uctodata | 10 | {linguistics} |
libitpp | 9 | {engineering-dev,mathematics-dev} |
pcl | 9 | {robotics-dev} |
picosat | 9 | {logic} |
toulbar2 | 9 | {logic,physics,mathematics,numericalcomputation} |
- ucto | 9 | {linguistics} |
+ uctodata | 9 | {linguistics} |
apophenia | 8 | {statistics} |
- cliquer | 8 | {mathematics} |
+ debian-science | 8 | {physics,nanoscale-physics,machine-learning,economics,mathematics} |
dune-uggrid | 8 | {mathematics-dev} |
getdp | 8 | {engineering,mathematics,simulations} |
libvigraimpex | 8 | {machine-learning,imageanalysis-dev} |
neuron | 8 | {highenergy-physics-dev} |
polylib | 8 | {mathematics} |
ros-rosconsole | 8 | {robotics-dev} |
+ ucto | 8 | {linguistics} |
urdfdom-headers | 8 | {robotics-dev} |
coinmp | 7 | {logic,mathematics-dev,numericalcomputation} |
- debian-science | 7 | {physics,nanoscale-physics,machine-learning,economics,mathematics} |
muparser | 7 | {mathematics-dev} |
simbody | 7 | {robotics-dev} |
syrthes | 7 | {engineering} |
alberta | 6 | {engineering-dev} |
astk | 6 | {engineering} |
- debian-science | 6 | {neuroscience-cognitive,machine-learning} |
+ cliquer | 6 | {mathematics} |
debian-science | 6 | {physics,nanoscale-physics,statistics,economics} |
+ debian-science | 6 | {neuroscience-cognitive,machine-learning} |
debian-science | 6 | {nanoscale-physics,machine-learning,physics,economics} |
dxsamples | 6 | {nanoscale-physics} |
+ etsf-io | 6 | {nanoscale-physics,physics} |
ipe-tools | 6 | {typesetting} |
lrcalc | 6 | {mathematics} |
lxi-tools | 6 | {engineering,dataacquisition} |
+ cernlib | 5 | {highenergy-physics} |
cimg | 5 | {imageanalysis-dev} | {x11::library}
code-saturne | 5 | {engineering-dev,mathematics-dev} |
dune-istl | 5 | {mathematics-dev} |
eclib | 5 | {mathematics-dev} |
- etsf-io | 5 | {nanoscale-physics,physics} |
ipe-tools | 5 | {typesetting} |
libbraiding | 5 | {mathematics-dev} |
libmatheval | 5 | {mathematics} |
opencascade | 5 | {simulations} |
psurface | 5 | {numericalcomputation} |
- scram | 5 | {engineering} |
taurus | 5 | {dataacquisition} |
teem | 5 | {imageanalysis} |
cernlib | 4 | {highenergy-physics} |
@@ -104,24 +104,22 @@ Last-Update: Thu, 31 Mar 2022 01:42:04 +0000
optlang | 4 | {mathematics-dev} |
python-escript | 4 | {simulations,numericalcomputation,engineering} |
qwtplot3d | 4 | {viewing-dev} |
+ scram | 4 | {engineering} |
cernlib | 3 | {highenergy-physics} |
cliquer | 3 | {mathematics-dev} |
coda | 3 | {meteorology-dev} |
debian-science | 3 | {tools} |
- debian-science | 3 | {electrophysiology} |
debian-science | 3 | {psychophysics} |
- dimbl | 3 | {linguistics} |
- frog | 3 | {linguistics} |
+ debian-science | 3 | {physics} |
+ debian-science | 3 | {electrophysiology} |
gf2x | 3 | {mathematics-dev} |
hpcc | 3 | {distributedcomputing,numericalcomputation} |
- irstlm | 3 | {linguistics} |
libcgns | 3 | {engineering-dev} |
libgetdata | 3 | {dataacquisition-dev} |
libgetdata | 3 | {dataacquisition} |
libhomfly | 3 | {mathematics-dev} |
libmatheval | 3 | {mathematics-dev} |
libvigraimpex | 3 | {imageanalysis-dev,machine-learning} |
- mbt | 3 | {linguistics} |
morse-simulator | 3 | {robotics} |
neuron | 3 | {highenergy-physics-dev} |
openmx | 3 | {nanoscale-physics,physics} |
@@ -129,7 +127,6 @@ Last-Update: Thu, 31 Mar 2022 01:42:04 +0000
sardana | 3 | {dataacquisition} |
sollya | 3 | {mathematics-dev} |
tango | 3 | {dataacquisition-dev} |
- timbl | 3 | {linguistics} |
apertium-streamparser | 2 | {linguistics} |
apophenia | 2 | {statistics} |
apriltag | 2 | {robotics-dev} |
@@ -139,21 +136,23 @@ Last-Update: Thu, 31 Mar 2022 01:42:04 +0000
clipper | 2 | {nanoscale-physics-dev} |
code-saturne | 2 | {engineering-dev,mathematics-dev} |
collada-dom | 2 | {viewing-dev} |
- debian-science | 2 | {physics} |
- debian-science | 2 | {electrophysiology} |
debian-science | 2 | {economics} |
+ debian-science | 2 | {electrophysiology} |
+ dimbl | 2 | {linguistics} |
dune-localfunctions | 2 | {mathematics-dev} |
fastjet | 2 | {highenergy-physics-dev} |
+ frog | 2 | {linguistics} |
harp | 2 | {meteorology} |
+ irstlm | 2 | {linguistics} |
jhdf | 2 | {engineering} |
jhdf | 2 | {engineering-dev} |
libccp4 | 2 | {nanoscale-physics-dev} |
libgetdata | 2 | {dataacquisition-dev} |
liblbfgs | 2 | {mathematics-dev} |
liblxi | 2 | {engineering-dev,dataacquisition-dev} |
- looptools | 2 | {highenergy-physics-dev} |
looptools | 2 | {highenergy-physics} |
- mbtserver | 2 | {linguistics} |
+ looptools | 2 | {highenergy-physics-dev} |
+ mbt | 2 | {linguistics} |
mrmpi | 2 | {tools} |
newmat | 2 | {mathematics-dev} |
openctm | 2 | {physics-dev} |
@@ -161,14 +160,14 @@ Last-Update: Thu, 31 Mar 2022 01:42:04 +0000
qd | 2 | {mathematics-dev} |
sac2mseed | 2 | {geography} |
tango | 2 | {dataacquisition-dev} |
- timblserver | 2 | {linguistics} |
+ timbl | 2 | {linguistics} |
x13as | 2 | {economics} |
cld2 | 1 | {linguistics} |
clhep | 1 | {highenergy-physics-dev} |
cqrlib | 1 | {mathematics-dev} |
cvector | 1 | {mathematics-dev} |
- debian-science | 1 | {nanoscale-physics-dev} |
debian-science | 1 | {neuroscience-cognitive} |
+ debian-science | 1 | {nanoscale-physics-dev} |
dune-functions | 1 | {mathematics-dev} |
dune-typetree | 1 | {mathematics-dev} |
frogdata | 1 | {linguistics} |
@@ -176,6 +175,7 @@ Last-Update: Thu, 31 Mar 2022 01:42:04 +0000
itsol | 1 | {mathematics-dev} |
libgtkdatabox | 1 | {engineering-dev,viewing-dev} |
liborigin2 | 1 | {viewing-dev} |
+ mbtserver | 1 | {linguistics} |
neartree | 1 | {mathematics-dev,numericalcomputation} |
ompl | 1 | {robotics-dev} |
openturns | 1 | {engineering-dev,meteorology-dev,mathematics-dev} |
@@ -186,6 +186,7 @@ Last-Update: Thu, 31 Mar 2022 01:42:04 +0000
sollya | 1 | {mathematics-dev} |
sparskit | 1 | {mathematics-dev} |
tamuanova | 1 | {statistics} |
+ timblserver | 1 | {linguistics} |
vlfeat | 1 | {imageanalysis-dev} |
apertium-afr-nld | 0 | {linguistics} |
apertium-bel-rus | 0 | {linguistics} |
@@ -240,8 +241,8 @@ Last-Update: Thu, 31 Mar 2022 01:42:04 +0000
libxsmm | 0 | {mathematics-dev} |
looptools | 0 | {highenergy-physics-dev} |
mclibs | 0 | {highenergy-physics} |
- metis-edf | 0 | {numericalcomputation,engineering} |
metis-edf | 0 | {engineering-dev} |
+ metis-edf | 0 | {numericalcomputation,engineering} |
ompl | 0 | {robotics} |
openturns | 0 | {meteorology-dev,engineering-dev,mathematics-dev} |
openturns | 0 | {statistics,meteorology-dev,mathematics-dev,mathematics,engineering,meteorology} |
@@ -259,12 +260,12 @@ Last-Update: Thu, 31 Mar 2022 01:42:04 +0000
sagemath-database-polytopes | 0 | {mathematics} |
siscone | 0 | {highenergy-physics-dev} |
slicot | 0 | {robotics-dev,engineering-dev} |
- ssm | 0 | {nanoscale-physics-dev} |
ssm | 0 | {nanoscale-physics} |
+ ssm | 0 | {nanoscale-physics-dev} |
tachyon | 0 | {mathematics} |
tango | 0 | {dataacquisition} |
triangle | 0 | {physics-dev} |
trilinos | 0 | {engineering-dev,physics-dev,mathematics-dev} |
visp-images | 0 | {robotics-dev} |
-(298 rows)
+(299 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/2299ae86ba48e742db9197d56eff457aeeba254e
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