[med-svn] [Git][med-team/snakemake][master] 2 commits: skip a test that now needs python3-retry, add missing test-depends

[Rebecca N. Palmer (@rnpalmer-guest)]

Rebecca N. Palmer pushed to branch master at Debian Med / snakemake


Commits:
6be4ab3c by Rebecca N. Palmer at 2022-03-30T07:41:06+01:00
skip a test that now needs python3-retry, add missing test-depends

- - - - -
8f6abdbf by Rebecca N. Palmer at 2022-03-30T07:42:41+01:00
Update Lintian overrides.

- - - - -


5 changed files:

- debian/changelog
- debian/rules
- debian/source/lintian-overrides
- debian/tests/control
- debian/tests/run-unit-test


Changes:

=====================================
debian/changelog
=====================================
@@ -1,10 +1,11 @@
 snakemake (7.3.3-1) unstable; urgency=medium
 
   * New upstream release.  Refresh patches, d/copyright.
-  * Skip new unrunnable-in-Debian tests.
+  * Skip some more unrunnable-in-Debian tests.
   * Update dependencies.
+  * Update Lintian overrides.
 
- -- Rebecca N. Palmer <rebecca_palmer at zoho.com>  Tue, 29 Mar 2022 23:06:32 +0100
+ -- Rebecca N. Palmer <rebecca_palmer at zoho.com>  Wed, 30 Mar 2022 07:41:56 +0100
 
 snakemake (6.15.5-1) unstable; urgency=medium
 


=====================================
debian/rules
=====================================
@@ -19,7 +19,7 @@ export PYBUILD_TEST_ARGS=python{version} -m pytest -v {build_dir}/tests/test*.py
 
 # Skipped due to not-in-Debian dependencies
 # python3-moto (RFP #777089): test_default_resources, test_default_remote, test_remote, test_output_file_cache_remote
-# python3-retry: test_modules_prefix
+# python3-retry: test_modules_prefix test_ancient
 # python3-peppy: test_peppy, test_modules_peppy
 # python3-tibanna: test_tibanna (possibly also specific to one cloud provider?)
 # python3-tes: test_tes


=====================================
debian/source/lintian-overrides
=====================================
@@ -1,6 +1,7 @@
-# This is just pure test data we need to compare with
+# This is expected test output
 snakemake source: source-is-missing tests/test_report/expected-results/report.html
 snakemake source: source-is-missing tests/test_module_report/expected-results/report.html
+snakemake source: source-is-missing tests/test_report_display_code/expected-results/report.html
 snakemake source: embedded-script-includes-copyright-statement tests/test_module_report/expected-results/report.html extract of copyright statement: (c) js foundation and other contributors | jquery.org/l
 snakemake source: embedded-script-includes-copyright-statement tests/test_report/expected-results/report.html extract of copyright statement: (c) js foundation and other contributors | jquery.org/l
 


=====================================
debian/tests/control
=====================================
@@ -7,6 +7,7 @@ Restrictions: allow-stderr
 Tests: run-unit-test
 Depends: snakemake,
          environment-modules,
+         graphviz,
          r-base-core,
          python3-connection-pool,
          python3-ftputil,


=====================================
debian/tests/run-unit-test
=====================================
@@ -25,4 +25,4 @@ export HOME="${AUTOPKGTEST_TMP}"
 python3 -m pytest -o faulthandler_timeeout=60 -v tests/test*.py -k 'test_pipes_fail' || python3 -m pytest -o faulthandler_timeeout=60 -v tests/test*.py -k 'test_pipes_fail' || python3 -m pytest -o faulthandler_timeeout=60 -v tests/test*.py -k 'test_pipes_fail'
 
 #See debian/rules for why these are excluded
-python3 -m pytest -v tests/test*.py -k 'not test_cwl and not test_cwl_singularity and not test_url_include and not test_wrapper and not test_issue1083 and not test_github_issue78 and not test_container and not test_singularity and not test_singularity_conda and not test_convert_to_cwl and not test_report and not test_report_zip and not test_archive and not test_jupyter_notebook and not test_conda and not test_upstream_conda and not test_conda_custom_prefix and not test_script and not test_issue635 and not test_issue1093 and not test_default_resources and not test_default_remote and not test_remote and not test_output_file_cache_remote and not test_tibanna and not test_module_complex and not test_module_complex2 and not test_module_with_script and not test_module_report and not test_modules_meta_wrapper and not test_tes and not test_deploy_script and not test_deploy_hashing and not test_peppy and not test_modules_peppy and not test_report_display_code and not test_wrapper_local_git_prefix and not test_template_engine and not test_github_issue1396 and not test_modules_prefix and not test_env_modules and not test_github_issue1062 and not test_pipes_fail'
+python3 -m pytest -v tests/test*.py -k 'not test_cwl and not test_cwl_singularity and not test_url_include and not test_wrapper and not test_issue1083 and not test_github_issue78 and not test_container and not test_singularity and not test_singularity_conda and not test_convert_to_cwl and not test_report and not test_report_zip and not test_archive and not test_jupyter_notebook and not test_conda and not test_upstream_conda and not test_conda_custom_prefix and not test_script and not test_issue635 and not test_issue1093 and not test_default_resources and not test_default_remote and not test_remote and not test_output_file_cache_remote and not test_tibanna and not test_module_complex and not test_module_complex2 and not test_module_with_script and not test_module_report and not test_modules_meta_wrapper and not test_tes and not test_deploy_script and not test_deploy_hashing and not test_peppy and not test_modules_peppy and not test_report_display_code and not test_wrapper_local_git_prefix and not test_template_engine and not test_github_issue1396 and not test_modules_prefix and not test_env_modules and not test_github_issue1062 and not test_pipes_fail and not test_ancient'



View it on GitLab: https://salsa.debian.org/med-team/snakemake/-/compare/978041efeaef06f96df3e59f062308527f9b0816...8f6abdbfe37defe6baa33f284b26c1803c1496b9

-- 
View it on GitLab: https://salsa.debian.org/med-team/snakemake/-/compare/978041efeaef06f96df3e59f062308527f9b0816...8f6abdbfe37defe6baa33f284b26c1803c1496b9
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