Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
36050748 by Andreas Tille at 2022-05-05T13:42:22+00:00
automatic update
- - - - -
3 changed files:
- debian-med-tests.txt
- debian-science-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,54 +1,54 @@
-Last-Update: Thu, 05 May 2022 01:42:04 +0000
+Last-Update: Thu, 05 May 2022 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 171 | {imaging,covid-19} |
- orthanc | 100 | {imaging,covid-19,practice} |
- orthanc-wsi | 50 | {laboratory,practice,imaging,covid-19,oncology,his} |
+ dcmtk | 174 | {imaging,covid-19} |
+ orthanc | 104 | {imaging,covid-19,practice} |
+ orthanc-wsi | 53 | {laboratory,practice,imaging,covid-19,oncology,his} |
amide | 26 | {imaging} |
- dcm2niix | 22 | {imaging} |
+ dcm2niix | 23 | {imaging} |
+ dicom3tools | 23 | {imaging} |
dicomscope | 22 | {imaging} |
- dicom3tools | 21 | {imaging} |
- orthanc-webviewer | 16 | {imaging} |
+ orthanc-webviewer | 17 | {imaging} |
+ minc-tools | 14 | {imaging} |
gdcm | 12 | {imaging-dev} |
- minc-tools | 12 | {imaging} |
mrtrix3 | 12 | {imaging} |
+ orthanc-dicomweb | 12 | {covid-19,imaging} |
gnumed-server | 11 | {practice,covid-19} |
nipype | 11 | {imaging,imaging-dev} |
openslide | 11 | {imaging-dev} |
- orthanc-dicomweb | 11 | {covid-19,imaging} |
+ gdcm | 10 | {imaging,covid-19} |
invesalius | 10 | {imaging} |
dicomnifti | 9 | {imaging} |
- gdcm | 9 | {imaging,covid-19} |
oscar | 9 | {data,practice,tools} |
+ mia | 8 | {imaging} |
+ nifti2dicom | 8 | {imaging} |
orthanc-mysql | 8 | {imaging} |
biojava-live | 7 | {bio-dev} |
- mia | 7 | {imaging} |
- nifti2dicom | 7 | {imaging} |
+ dicompyler | 7 | {oncology} |
+ libminc | 7 | {imaging-dev} |
+ librg-utils-perl | 7 | {bio} |
+ nifticlib | 7 | {imaging} |
openslide | 7 | {imaging} |
orthanc-postgresql | 7 | {imaging} |
pixelmed | 7 | {imaging} |
+ plastimatch | 7 | {imaging} |
treeview | 7 | {bio,bio-phylogeny} |
adun.app | 6 | {bio} |
- dicompyler | 6 | {oncology} |
- getdata | 6 | {bio} |
jebl2 | 6 | {bio-dev} |
- libminc | 6 | {imaging-dev} |
- nifticlib | 6 | {imaging} |
obitools | 6 | {bio} |
- plastimatch | 6 | {imaging} |
runcircos-gui | 6 | {bio} |
stacks | 6 | {bio} |
- canu | 5 | {bio} |
+ getdata | 5 | {bio} |
libncl | 5 | {bio} |
- librg-utils-perl | 5 | {bio} |
+ nifticlib | 5 | {imaging-dev} |
orthanc-gdcm | 5 | {imaging} |
saint | 5 | {bio} |
salmon | 5 | {bio,covid-19} |
staden | 5 | {bio} |
bio-tradis | 4 | {bio-dev,bio} |
+ canu | 4 | {bio} |
cmtk | 4 | {imaging} |
- embassy-domsearch | 4 | {cloud,bio} |
ghmm | 4 | {bio} |
ipig | 4 | {bio} |
king | 4 | {imaging,typesetting} |
@@ -56,7 +56,6 @@ Last-Update: Thu, 05 May 2022 01:42:04 +0000
mauve-aligner | 4 | {bio} |
melting | 4 | {bio,cloud} |
mhap | 4 | {bio-ngs,bio} |
- nifticlib | 4 | {imaging-dev} |
phyutility | 4 | {cloud,bio} |
piler | 4 | {bio} |
spread-phy | 4 | {bio-phylogeny,bio} |
@@ -72,12 +71,12 @@ Last-Update: Thu, 05 May 2022 01:42:04 +0000
delly | 3 | {covid-19,bio} |
dextractor | 3 | {covid-19,bio} |
elastix | 3 | {imaging} |
- embassy-domainatrix | 3 | {bio,cloud} |
- embassy-domalign | 3 | {cloud,bio} |
+ embassy-domsearch | 3 | {cloud,bio} |
fastml | 3 | {bio} |
gatb-core | 3 | {bio} |
hinge | 3 | {bio} |
jmodeltest | 3 | {bio,bio-phylogeny} |
+ libdivsufsort | 3 | {bio-dev} |
libpal-java | 3 | {bio-dev} |
librdp-taxonomy-tree-java | 3 | {bio-dev} |
libsbml | 3 | {bio-dev} |
@@ -98,12 +97,15 @@ Last-Update: Thu, 05 May 2022 01:42:04 +0000
sprai | 3 | {bio} |
suitename | 3 | {bio} |
surankco | 3 | {bio} |
+ trace2dbest | 3 | {bio} |
tracetuner | 3 | {bio} |
tvc | 3 | {bio} |
zalign | 3 | {cloud,bio} |
assemblytics | 2 | {bio} |
bart-view | 2 | {imaging} |
cufflinks | 2 | {bio,cloud} |
+ embassy-domainatrix | 2 | {bio,cloud} |
+ embassy-domalign | 2 | {cloud,bio} |
emboss-explorer | 2 | {bio} |
emmax | 2 | {bio} |
kmerresistance | 2 | {bio} |
@@ -115,21 +117,19 @@ Last-Update: Thu, 05 May 2022 01:42:04 +0000
plasmidid | 2 | {covid-19,bio} |
pplacer | 2 | {covid-19,bio-phylogeny,bio} |
pymia | 2 | {imaging-dev} |
+ python-wdlparse | 2 | {bio-dev} |
rambo-k | 2 | {bio} |
rdp-alignment | 2 | {bio} |
skesa | 2 | {bio} |
thesias | 2 | {bio,covid-19} |
tophat-recondition | 2 | {covid-19,bio} |
- trace2dbest | 2 | {bio} |
biomaj3-cli | 1 | {cloud} |
htscodecs | 1 | {covid-19,bio-dev} |
libchado-perl | 1 | {bio-dev} |
libctapimkt | 1 | {practice} |
- libdivsufsort | 1 | {bio-dev} |
libgenome | 1 | {bio-dev} |
mssstest | 1 | {tools} |
papyrus | 1 | {imaging-dev} |
- python-wdlparse | 1 | {bio-dev} |
seq-gen | 1 | {bio} |
srf | 1 | {bio-dev} |
varna | 1 | {bio} |
@@ -181,8 +181,8 @@ Last-Update: Thu, 05 May 2022 01:42:04 +0000
orthanc-imagej | 0 | {imaging} |
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
- python-seqcluster | 0 | {covid-19,bio-dev} |
python-seqcluster | 0 | {bio} |
+ python-seqcluster | 0 | {covid-19,bio-dev} |
resfinder-db | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
sight | 0 | {imaging-dev} |
=====================================
debian-science-tests.txt
=====================================
@@ -1,77 +1,78 @@
-Last-Update: Thu, 05 May 2022 01:42:04 +0000
+Last-Update: Thu, 05 May 2022 13:42:05 +0000
Source | Vote | Tasks | Tags
-----------------------------------------+--------+----------------------------------------------------------------------------------+--------------------------------------------------------------------
- gts | 2987 | {viewing} |
- sympy | 1770 | {physics,nanoscale-physics} |
- suitesparse | 246 | {mathematics-dev,numericalcomputation} |
+ gts | 2997 | {viewing} |
+ sympy | 1813 | {physics,nanoscale-physics} |
+ suitesparse | 251 | {mathematics-dev,numericalcomputation} |
armadillo | 218 | {mathematics-dev} |
python-pyqtgraph | 125 | {viewing} |
- atlas | 88 | {mathematics-dev} |
- nltk | 82 | {linguistics} |
- arpack | 61 | {mathematics-dev} |
+ atlas | 89 | {mathematics-dev} |
+ nltk | 84 | {linguistics} |
+ arpack | 62 | {mathematics-dev} |
cypari2 | 51 | {mathematics-dev} |
+ arduino-mk | 47 | {robotics} |
imview | 47 | {viewing} |
- arduino-mk | 44 | {robotics} |
- pyzo | 37 | {numericalcomputation} |
- rubiks | 37 | {geometry,mathematics} |
- flintqs | 31 | {mathematics} |
- eclib | 30 | {mathematics} |
- scalapack | 28 | {nanoscale-physics-dev} |
- fftw | 27 | {mathematics-dev,meteorology-dev,physics-dev} |
+ pyzo | 40 | {numericalcomputation} |
+ rubiks | 39 | {geometry,mathematics} |
+ eclib | 32 | {mathematics} |
+ flintqs | 32 | {mathematics} |
+ scalapack | 30 | {nanoscale-physics-dev} |
+ fftw | 29 | {mathematics-dev,meteorology-dev,physics-dev} |
feedgnuplot | 23 | {viewing} |
- guidata | 22 | {dataacquisition-dev} |
- guiqwt | 22 | {numericalcomputation,viewing} |
- sketch | 21 | {typesetting} |
- vitables | 21 | {numericalcomputation} |
+ sketch | 22 | {typesetting} |
+ vitables | 22 | {numericalcomputation} |
+ guidata | 21 | {dataacquisition-dev} |
+ guiqwt | 21 | {numericalcomputation,viewing} |
bossa | 20 | {devices} |
geg | 20 | {viewing} |
- gts | 19 | {viewing-dev} |
+ gts | 20 | {viewing-dev} |
neuron | 19 | {neuroscience-modeling,highenergy-physics,simulations} |
+ libmatio | 18 | {mathematics-dev} |
cernlib | 17 | {highenergy-physics} |
coinor-symphony | 17 | {mathematics,logic,numericalcomputation} |
- flann | 17 | {mathematics-dev,engineering-dev} |
+ flann | 16 | {mathematics-dev,engineering-dev} |
gfsview | 16 | {viewing} |
- libmatio | 16 | {mathematics-dev} |
- ntl | 15 | {mathematics-dev} |
+ ros-ros-environment | 16 | {robotics-dev} |
cernlib | 14 | {highenergy-physics-dev} |
- ros-ros-environment | 14 | {robotics-dev} |
auto-07p | 13 | {mathematics} |
form | 13 | {mathematics} |
mathgl | 13 | {viewing} |
neuron | 13 | {highenergy-physics-dev} |
- picosat | 13 | {logic} |
+ ntl | 13 | {mathematics-dev} |
ppl | 13 | {numericalcomputation} |
+ apophenia | 12 | {statistics} |
opencascade | 12 | {simulations} |
opticalraytracer | 12 | {physics} |
+ picosat | 12 | {logic} |
toulbar2 | 12 | {mathematics,numericalcomputation,logic,physics} |
- uctodata | 12 | {linguistics} |
- apophenia | 11 | {statistics} |
libm4ri | 11 | {mathematics-dev} |
- pcl | 11 | {robotics-dev} |
+ ros-rosconsole | 11 | {robotics-dev} |
tango | 11 | {dataacquisition} |
ucto | 11 | {linguistics} |
+ uctodata | 11 | {linguistics} |
getdp | 10 | {engineering,simulations,mathematics} |
+ pcl | 10 | {robotics-dev} |
polylib | 10 | {mathematics} |
- ros-rosconsole | 10 | {robotics-dev} |
- debian-science | 9 | {nanoscale-physics,mathematics,physics,economics,machine-learning} |
debian-science | 9 | {nanoscale-physics,economics,physics,machine-learning} |
+ debian-science | 9 | {nanoscale-physics,mathematics,physics,economics,machine-learning} |
+ fftw | 9 | {mathematics-dev,meteorology-dev,physics-dev} |
lxi-tools | 9 | {engineering,dataacquisition} |
+ matlab-support | 9 | {mathematics,numericalcomputation} |
rheolef | 9 | {mathematics} |
- teem | 9 | {imageanalysis} |
debian-science | 8 | {physics,nanoscale-physics,economics,statistics} |
jeuclid | 8 | {viewing,typesetting} |
- libitpp | 8 | {mathematics-dev,engineering-dev} |
lrcalc | 8 | {mathematics} |
- matlab-support | 8 | {mathematics,numericalcomputation} |
syrthes | 8 | {engineering} |
tango | 8 | {dataacquisition} |
+ teem | 8 | {imageanalysis} |
cliquer | 7 | {mathematics} |
dune-uggrid | 7 | {mathematics-dev} |
etsf-io | 7 | {nanoscale-physics,physics} |
- fftw | 7 | {mathematics-dev,meteorology-dev,physics-dev} |
ipe-tools | 7 | {typesetting} |
libcgns | 7 | {engineering} |
+ libitpp | 7 | {mathematics-dev,engineering-dev} |
+ muparser | 7 | {mathematics-dev} |
psurface | 7 | {numericalcomputation} |
python-escript | 7 | {numericalcomputation,engineering,simulations} |
astk | 6 | {engineering} |
@@ -80,25 +81,24 @@ Last-Update: Thu, 05 May 2022 01:42:04 +0000
debian-science | 6 | {machine-learning,neuroscience-cognitive} |
dxsamples | 6 | {nanoscale-physics} |
frog | 6 | {linguistics} |
+ libmatheval | 6 | {mathematics} |
libvigraimpex | 6 | {imageanalysis-dev,machine-learning} |
neuron | 6 | {highenergy-physics-dev} |
+ opencascade | 6 | {simulations} |
scram | 6 | {engineering} |
alberta | 5 | {engineering-dev} |
- cliquer | 5 | {mathematics-dev} |
debian-science | 5 | {electrophysiology} |
dimbl | 5 | {linguistics} |
dune-istl | 5 | {mathematics-dev} |
eclib | 5 | {mathematics-dev} |
+ gf2x | 5 | {mathematics-dev} |
irstlm | 5 | {linguistics} |
libgetdata | 5 | {dataacquisition} |
libm4rie | 5 | {mathematics-dev} |
- libmatheval | 5 | {mathematics} |
libzn-poly | 5 | {mathematics-dev} |
lrcalc | 5 | {mathematics-dev} |
mbt | 5 | {linguistics} |
morse-simulator | 5 | {robotics} |
- muparser | 5 | {mathematics-dev} |
- opencascade | 5 | {simulations} |
sac2mseed | 5 | {geography} |
simbody | 5 | {robotics-dev} |
timbl | 5 | {linguistics} |
@@ -107,72 +107,85 @@ Last-Update: Thu, 05 May 2022 01:42:04 +0000
cbflib | 4 | {nanoscale-physics} |
cernlib | 4 | {highenergy-physics} |
clhep | 4 | {highenergy-physics-dev} |
+ cliquer | 4 | {mathematics-dev} |
+ coda | 4 | {meteorology-dev} |
coda | 4 | {meteorology} |
coinmp | 4 | {numericalcomputation,logic,mathematics-dev} |
debian-science | 4 | {psychophysics} |
debian-science | 4 | {tools} |
- gf2x | 4 | {mathematics-dev} |
iml | 4 | {mathematics-dev} |
- libhomfly | 4 | {mathematics-dev} |
+ libmatheval | 4 | {mathematics-dev} |
mbtserver | 4 | {linguistics} |
mrmpi | 4 | {tools} |
openmx | 4 | {physics,nanoscale-physics} |
qd | 4 | {mathematics-dev} |
qwtplot3d | 4 | {viewing-dev} |
+ ratpoints | 4 | {mathematics-dev} |
+ tango | 4 | {dataacquisition-dev} |
taurus | 4 | {dataacquisition} |
timblserver | 4 | {linguistics} |
x13as | 4 | {economics} |
cernlib | 3 | {highenergy-physics} |
- coda | 3 | {meteorology-dev} |
debian-science | 3 | {electrophysiology} |
debian-science | 3 | {nanoscale-physics-dev} |
dune-localfunctions | 3 | {mathematics-dev} |
dxflib | 3 | {engineering-dev} |
ipe-tools | 3 | {typesetting} |
+ libcgns | 3 | {engineering-dev} |
+ libgetdata | 3 | {dataacquisition-dev} |
libgtkdatabox | 3 | {engineering-dev,viewing-dev} |
- libmatheval | 3 | {mathematics-dev} |
+ libhomfly | 3 | {mathematics-dev} |
looptools | 3 | {highenergy-physics} |
+ newmat | 3 | {mathematics-dev} |
openstereogram | 3 | {tools} |
- ratpoints | 3 | {mathematics-dev} |
sardana | 3 | {dataacquisition} |
tango | 3 | {dataacquisition-dev} |
apophenia | 2 | {statistics} |
cernlib | 2 | {highenergy-physics} |
- debian-science | 2 | {physics} |
+ clipper | 2 | {nanoscale-physics-dev} |
debian-science | 2 | {economics} |
+ debian-science | 2 | {physics} |
fastjet | 2 | {highenergy-physics-dev} |
harp | 2 | {meteorology} |
hpcc | 2 | {numericalcomputation,distributedcomputing} |
- libcgns | 2 | {engineering-dev} |
+ libccp4 | 2 | {nanoscale-physics-dev} |
libgetdata | 2 | {dataacquisition-dev} |
+ liblbfgs | 2 | {mathematics-dev} |
+ liblxi | 2 | {dataacquisition-dev,engineering-dev} |
looptools | 2 | {highenergy-physics-dev} |
- newmat | 2 | {mathematics-dev} |
+ openctm | 2 | {physics-dev} |
openturns | 2 | {engineering-dev,meteorology-dev,mathematics-dev} |
+ sparskit | 2 | {mathematics-dev} |
+ ssm | 2 | {nanoscale-physics} |
+ asl | 1 | {physics-dev} |
+ cbflib | 1 | {nanoscale-physics-dev} |
ckon | 1 | {highenergy-physics-dev} |
- clipper | 1 | {nanoscale-physics-dev} |
+ cld2 | 1 | {linguistics} |
coda | 1 | {meteorology-dev} |
code-saturne | 1 | {engineering-dev,mathematics-dev} |
+ cqrlib | 1 | {mathematics-dev} |
+ cvector | 1 | {mathematics-dev} |
debian-science | 1 | {neuroscience-cognitive} |
dune-functions | 1 | {mathematics-dev} |
dune-typetree | 1 | {mathematics-dev} |
- frogdata | 1 | {linguistics} |
- libccp4 | 1 | {nanoscale-physics-dev} |
- libgetdata | 1 | {dataacquisition-dev} |
- liblbfgs | 1 | {mathematics-dev} |
- liblxi | 1 | {dataacquisition-dev,engineering-dev} |
+ gemmlowp | 1 | {mathematics-dev} |
+ itsol | 1 | {mathematics-dev} |
+ liborigin2 | 1 | {viewing-dev} |
metis-edf | 1 | {numericalcomputation,engineering} |
+ neartree | 1 | {numericalcomputation,mathematics-dev} |
ompl | 1 | {robotics-dev} |
- openctm | 1 | {physics-dev} |
openigtlink | 1 | {robotics-dev} |
openturns | 1 | {mathematics,statistics,engineering,meteorology-dev,mathematics-dev,meteorology} |
pycollada | 1 | {engineering-dev} |
pynac | 1 | {mathematics-dev} |
+ python-aws-xray-sdk | 1 | {dataacquisition-dev} |
python-escript | 1 | {simulations,engineering,numericalcomputation} |
+ quadrule | 1 | {mathematics-dev} |
ros-opencv-apps | 1 | {robotics} |
- sparskit | 1 | {mathematics-dev} |
- ssm | 1 | {nanoscale-physics} |
+ ssm | 1 | {nanoscale-physics-dev} |
tamuanova | 1 | {statistics} |
tango | 1 | {dataacquisition} |
+ vlfeat | 1 | {imageanalysis-dev} |
apertium-afr-nld | 0 | {linguistics} |
apertium-bel-rus | 0 | {linguistics} |
apertium-en-es | 0 | {linguistics} |
@@ -204,33 +217,26 @@ Last-Update: Thu, 05 May 2022 01:42:04 +0000
apertium-urd | 0 | {linguistics} |
apertium-urd-hin | 0 | {linguistics} |
apriltag | 0 | {robotics-dev} |
- asl | 0 | {physics-dev} |
calculix-ccx-doc | 0 | {simulations,numericalcomputation,engineering} |
calculix-ccx-test | 0 | {simulations,engineering,numericalcomputation} |
- cbflib | 0 | {nanoscale-physics-dev} |
cernlib | 0 | {highenergy-physics} |
cernlib | 0 | {highenergy-physics-dev} |
cernlib | 0 | {highenergy-physics,physics} |
- cld2 | 0 | {linguistics} |
clhep | 0 | {highenergy-physics-dev} |
coda | 0 | {meteorology-dev} |
code-saturne | 0 | {engineering} |
collada-dom | 0 | {viewing-dev} |
- cqrlib | 0 | {mathematics-dev} |
- cvector | 0 | {mathematics-dev} |
dune-grid-glue | 0 | {mathematics-dev} |
dune-pdelab | 0 | {mathematics-dev} |
etsf-io | 0 | {nanoscale-physics-dev} |
fastjet | 0 | {highenergy-physics-dev} |
- gemmlowp | 0 | {mathematics-dev} |
+ frogdata | 0 | {linguistics} |
glpk-java | 0 | {mathematics-dev} |
- itsol | 0 | {mathematics-dev} |
jhdf | 0 | {engineering} |
jhdf | 0 | {engineering-dev} |
libdogleg | 0 | {mathematics-dev} |
libfolia | 0 | {linguistics} |
libgetdata | 0 | {dataacquisition-dev} |
- liborigin2 | 0 | {viewing-dev} |
libquantum | 0 | {numericalcomputation} |
librsl | 0 | {meteorology-dev} |
libsdsl | 0 | {dataacquisition-dev} |
@@ -239,16 +245,13 @@ Last-Update: Thu, 05 May 2022 01:42:04 +0000
looptools | 0 | {highenergy-physics-dev} |
mclibs | 0 | {highenergy-physics} |
metis-edf | 0 | {engineering-dev} |
- neartree | 0 | {numericalcomputation,mathematics-dev} |
ompl | 0 | {robotics} |
openturns | 0 | {engineering-dev,mathematics-dev,meteorology-dev} |
psurface | 0 | {numericalcomputation} |
- python-aws-xray-sdk | 0 | {dataacquisition-dev} |
qrupdate | 0 | {mathematics-dev} |
- quadrule | 0 | {mathematics-dev} |
robot-testing-framework | 0 | {robotics-dev} |
- ros-metapackages | 0 | {robotics-dev} |
ros-metapackages | 0 | {robotics} |
+ ros-metapackages | 0 | {robotics-dev} |
sagemath-database-combinatorial-designs | 0 | {mathematics} |
sagemath-database-conway-polynomials | 0 | {mathematics} |
sagemath-database-elliptic-curves | 0 | {mathematics} |
@@ -256,11 +259,9 @@ Last-Update: Thu, 05 May 2022 01:42:04 +0000
sagemath-database-polytopes | 0 | {mathematics} |
siscone | 0 | {highenergy-physics-dev} |
slicot | 0 | {robotics-dev,engineering-dev} |
- ssm | 0 | {nanoscale-physics-dev} |
tachyon | 0 | {mathematics} |
triangle | 0 | {physics-dev} |
trilinos | 0 | {physics-dev,mathematics-dev,engineering-dev} |
visp-images | 0 | {robotics-dev} |
- vlfeat | 0 | {imageanalysis-dev} |
-(294 rows)
+(295 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
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