[med-svn] [Git][med-team/ncbi-igblast][master] 2 commits: initialize changelog
Étienne Mollier (@emollier)
gitlab at salsa.debian.org
Mon May 16 23:07:46 BST 2022
Étienne Mollier pushed to branch master at Debian Med / ncbi-igblast
Commits:
e02b21aa by Étienne Mollier at 2022-05-16T23:01:37+02:00
initialize changelog
- - - - -
9e44c757 by Étienne Mollier at 2022-05-17T00:07:16+02:00
d/copyright: begun full review.
- - - - -
2 changed files:
- debian/changelog
- debian/copyright
Changes:
=====================================
debian/changelog
=====================================
@@ -1,3 +1,9 @@
+ncbi-igblast (1.18.0-2) UNRELEASED; urgency=medium
+
+ * Team upload.
+
+ -- Étienne Mollier <emollier at debian.org> Mon, 16 May 2022 23:01:21 +0200
+
ncbi-igblast (1.18.0-1) unstable; urgency=low
* Team upload
=====================================
debian/copyright
=====================================
@@ -7,6 +7,336 @@ Files: *
Copyright: 2018, National Center for Biotechnology Information
License: PD
+Files: c++/include/util/compress/bzip2/*
+ c++/src/util/compress/bzip2/*
+Copyright: 1996-2010, Julian Seward <jseward at bzip.org>
+License: BSD-variant
+ Redistribution and use in source and binary forms, with or without
+ modification, are permitted provided that the following conditions
+ are met:
+ .
+ 1. Redistributions of source code must retain the above copyright
+ notice, this list of conditions and the following disclaimer.
+ .
+ 2. The origin of this software must not be misrepresented; you must
+ not claim that you wrote the original software. If you use this
+ software in a product, an acknowledgment in the product
+ documentation would be appreciated but is not required.
+ .
+ 3. Altered source versions must be plainly marked as such, and must
+ not be misrepresented as being the original software.
+ .
+ 4. The name of the author may not be used to endorse or promote
+ products derived from this software without specific prior written
+ permission.
+ .
+ THIS SOFTWARE IS PROVIDED BY THE AUTHOR ``AS IS'' AND ANY EXPRESS
+ OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
+ WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
+ ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHOR BE LIABLE FOR ANY
+ DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
+ DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE
+ GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
+ INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
+ WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
+ NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
+ SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+
+Files: c++/src/util/compress/bzip2/dlltest.c
+Copyright: Yoshioka Tsuneo
+License: PD
+
+Files: c++/include/corelib/hash_impl/_hash_fun.h
+ c++/include/corelib/hash_impl/_hash_map.h
+ c++/include/corelib/hash_impl/_hash_set.h
+ c++/include/corelib/hash_impl/_hashtable.c
+ c++/include/corelib/hash_impl/_hashtable.h
+Copyright: 1996-1998, Silicon Graphics Computer Systems, Inc.
+ 1994, Hewlett-Packard Company
+ 1999, Boris Fomitchev
+ 1997, Moscow Center for SPARC Technology
+ 1996, 1997, Silicon Graphics Computer Systems, Inc.
+ 1994, Hewlett-Packard Company
+License: ISC-variant
+ Permission to use, copy, modify, distribute and sell this software
+ and its documentation for any purpose is hereby granted without fee,
+ provided that the above copyright notice appear in all copies and
+ that both that copyright notice and this permission notice appear
+ in supporting documentation. The licensor makes no
+ representations about the suitability of this software for any
+ purpose. It is provided "as is" without express or implied warranty.
+
+Files: c++/include/corelib/teamcity_messages.h
+ c++/src/corelib/teamcity_boost.cpp
+ c++/src/corelib/teamcity_messages.cpp
+Copyright: 2011, JetBrains s.r.o.
+License: Apache-2.0
+
+Files: c++/include/dbapi/driver/odbc/unix_odbc/odbcinst.h
+ c++/include/dbapi/driver/odbc/unix_odbc/sqlfront.h
+Copyright: 1999, Peter Harvey
+ 1998, 1999, Brian Bruns
+License: LGPL-2+
+
+Files: c++/include/misc/jsonwrapp/rapidjson11/*
+Copyright: 2015, THL A29 Limited, a Tencent company, and Milo Yip.
+License: Expat
+
+Files: c++/include/misc/jsonwrapp/rapidjson11/msinttypes/*
+Copyright: 2006-2013, Alexander Chemeris
+License: BSD-3-clause
+
+Files: c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp
+Copyright: National Center for Biotechnology Information
+License: PD
+Comment:
+ The "Copyright (c) 2000 by Houghton Mifflin Company" is about the book
+ "The American Heritage Dictionary of the English Language, 4th Edition."
+ referenced in the source file, not about the source file itself.
+
+Files: c++/include/util/bitset/*
+ c++/src/util/bitset/*
+Copyright: 2002-2021, Anatoliy Kuznetsov(anatoliy_kuznetsov at yahoo.com)
+License: Apache-2.0
+Comment:
+ Some of the algorithms here are based on modified libpopcnt library by Kim
+ Walisch[1], released under BSD-2-clause license.
+ .
+ [1]: https://github.com/kimwalisch/libpopcnt/
+
+Files: c++/include/util/compress/zlib/*
+ c++/src/util/compress/zlib/*
+Copyright: 1995-2013, Jean-loup Gailly and Mark Adler
+License: Zlib
+
+Files: c++/include/util/impl/floating_point_comparison.hpp
+Copyright: 2001-2008, Gennadiy Rozental
+License: BSL-1.0
+
+Files: c++/include/util/regexp/*
+ c++/src/util/regexp/*
+Copyright: 2003, 2005, 2010, Google Inc.
+ 1997-2018, University of Cambridge
+License: BSD-3-clause
+
+Files: c++/include/util/timsort.hpp
+Copyright: 2011, Fuji, Goro (gfx) <gfuji at cpan.org>.
+License: Expat
+
+Files: c++/scripts/xmlwrapp/*
+Copyright: 2001-2003, Peter J Jones (pjones at pmade.org)
+License: BSD-3-clause
+
+Files: c++/scripts/projects/quickblastp/*
+Copyright: National Center for Biotechnology Information
+License: PD or LGPL-2.1
+
+Files: c++/src/algo/blast/core/boost_erf.c
+Copyright: John Maddock 2006.
+License: BSL-1.0
+
+Files: c++/src/algo/blast/core/ncbi_erf.c
+ c++/src/util/miscmath.c
+ c++/src/util/ncbi_erf.c
+Copyright: 1993-2004, Sun Microsystems, Inc.
+License: SUN-ISC-variant
+ Permission to use, copy, modify, and distribute this
+ software is freely granted, provided that this notice
+ is preserved.
+
+Files: c++/src/build-system/*
+Copyright: 1992-1996, 1998-2012, Free Software Foundation, Inc.
+License: FSFUL
+ This file is free software; you can redistribute it and/or modify it
+ under the terms of the GNU General Public License as published by
+ the Free Software Foundation; either version 3 of the License, or
+ (at your option) any later version.
+ .
+ This program is distributed in the hope that it will be useful, but
+ WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
+ General Public License for more details.
+ .
+ You should have received a copy of the GNU General Public License
+ along with this program; if not, see <http://www.gnu.org/licenses/>.
+ .
+ As a special exception to the GNU General Public License, if you
+ distribute this file as part of a program that contains a
+ configuration script generated by Autoconf, you may include it under
+ the same distribution terms that you use for the rest of that
+ program. This Exception is an additional permission under section 7
+ of the GNU General Public License, version 3 ("GPLv3").
+
+Files: c++/src/build-system/cmake/FindPCRE.cmake
+Copyright: Martin Konrad
+License: GPL-2 or GPL-3
+
+Files: c++/src/build-system/cmake/FindSqlite3.cmake
+Copyright: 2007, Martin Dobias
+License: BSD
+# TODO: identify which BSD variant.
+
+Files: c++/src/build-system/cmake/HunterGate.cmake
+Copyright: 2013-2017, Ruslan Baratov
+License: BSD-2-clause
+ Redistribution and use in source and binary forms, with or without
+ modification, are permitted provided that the following conditions are met:
+ .
+ * Redistributions of source code must retain the above copyright notice, this
+ list of conditions and the following disclaimer.
+ .
+ * Redistributions in binary form must reproduce the above copyright notice,
+ this list of conditions and the following disclaimer in the documentation
+ and/or other materials provided with the distribution.
+ .
+ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
+ AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+ IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
+ DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
+ FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
+ DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
+ SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
+ CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
+ OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
+ OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+
+Files: c++/src/build-system/cmake/cmake-configure
+Copyright: Evan Nemerson
+License: CC-0
+ To the extent possible under law, the author(s) hereby waive all
+ copyright and related or neighboring rights to this work. For
+ details, see <https://creativecommons.org/publicdomain/zero/1.0/>
+
+Files: c++/src/build-system/m4/*
+Copyright: 2015, Enrico M. Crisostomo <enrico.m.crisostomo at gmail.com>
+ 2008, John Darrington <j.darrington at elvis.murdoch.edu.au>
+ 2008, Don Anderson <dda at sleepycat.com>
+ 2008, Paolo Bonzini <bonzini at gnu.org>
+License: FSFAP
+
+Files: c++/src/connect/parson.c
+ c++/src/connect/parson.h
+Copyright: 2012-2016, Krzysztof Gabis
+License: Expat
+
+Files: c++/src/connect/mbedtls/*
+Copyright: The Mbed TLS Contributors
+License: Apache-2.0 or GPL-2+ and/or GPL-2+
+
+Files: c++/src/html/*.js
+Copyright: 1997-1999, Netscape Communications Corp.
+License: Netscape
+ Netscape grants you a royalty free license to use or modify this
+ software provided that this copyright notice appears on all copies.
+ This software is provided "AS IS," without a warranty of any kind.
+
+Files: c++/src/util/checksum/cityhash/*
+ c++/src/util/checksum/farmhash/*
+Copyright: 2011, 2014, Google, Inc.
+License: Expat
+
+Files: c++/src/util/compress/api/miniz/*
+Copyright: 2013, 2014, RAD Game Tools and Valve Software
+ 2010-2014, Rich Geldreich and Tenacious Software LLC
+License: Expat
+
+## TODO below that point ######################################################
+
+Files: c++/src/util/lmdb/*
+Copyright: 1999-2003, The OpenLDAP Foundation, Redwood City
+ 2011-2019 Howard Chu, Symas Corp.
+License: OLDAP-2.8
+ Redistribution and use of this software and associated documentation
+ ("Software"), with or without modification, are permitted provided
+ that the following conditions are met:
+ .
+ 1. Redistributions in source form must retain copyright statements
+ and notices,
+ .
+ 2. Redistributions in binary form must reproduce applicable copyright
+ statements and notices, this list of conditions, and the following
+ disclaimer in the documentation and/or other materials provided
+ with the distribution, and
+ .
+ 3. Redistributions must contain a verbatim copy of this document.
+ .
+ The OpenLDAP Foundation may revise this license from time to time.
+ Each revision is distinguished by a version number. You may use
+ this Software under terms of this license revision or under the
+ terms of any subsequent revision of the license.
+ .
+ THIS SOFTWARE IS PROVIDED BY THE OPENLDAP FOUNDATION AND ITS
+ CONTRIBUTORS ``AS IS'' AND ANY EXPRESSED OR IMPLIED WARRANTIES,
+ INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY
+ AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT
+ SHALL THE OPENLDAP FOUNDATION, ITS CONTRIBUTORS, OR THE AUTHOR(S)
+ OR OWNER(S) OF THE SOFTWARE BE LIABLE FOR ANY DIRECT, INDIRECT,
+ INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING,
+ BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
+ LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
+ CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
+ LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN
+ ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
+ POSSIBILITY OF SUCH DAMAGE.
+ .
+ The names of the authors and copyright holders must not be used in
+ advertising or otherwise to promote the sale, use or other dealing
+ in this Software without specific, written prior permission. Title
+ to copyright in this Software shall at all times remain with copyright
+ holders.
+
+Files: c++/src/util/lmdbxx/*
+Copyright: Arto Bendiken
+License: Unlicense
+ Anyone is free to copy, modify, publish, use, compile, sell, or
+ distribute this software, either in source code form or as a compiled
+ binary, for any purpose, commercial or non-commercial, and by any
+ means.
+ .
+ In jurisdictions that recognize copyright laws, the author or authors
+ of this software dedicate any and all copyright interest in the
+ software to the public domain. We make this dedication for the benefit
+ of the public at large and to the detriment of our heirs and
+ successors. We intend this dedication to be an overt act of
+ relinquishment in perpetuity of all present and future rights to this
+ software under copyright law.
+ .
+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
+ EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
+ MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT.
+ IN NO EVENT SHALL THE AUTHORS BE LIABLE FOR ANY CLAIM, DAMAGES OR
+ OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE,
+ ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR
+ OTHER DEALINGS IN THE SOFTWARE.
+ .
+ For more information, please refer to <http://unlicense.org/>
+
+Files: c++/src/util/qparse/query_parser_bison.tab.c
+Copyright: 1984, 1989, 1990, 2000-2006, Free Software Foundation, Inc.
+License: GPL-3+ with Bison-2.2 exception
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation, either version 3 of the License, or
+ (at your option) any later version.
+ .
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+ .
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see <http://www.gnu.org/licenses/>.
+ .
+ As a special exception, you may create a larger work that contains
+ part or all of the Bison parser skeleton and distribute that work
+ under terms of your choice, so long as that work isn't itself a
+ parser generator using the skeleton or a modified version thereof
+ as a parser skeleton. Alternatively, if you modify or redistribute
+ the parser skeleton itself, you may (at your option) remove this
+ special exception, which will cause the skeleton and the resulting
+ Bison output files to be licensed under the GNU General Public
+ License without this special exception.
+
Files: debian/*
Copyright: 2018, David Miguel Susano Pinto <carandraug+dev at gmail.com>
License: GPL-3+
@@ -29,3 +359,63 @@ License: PD
Government disclaim all warranties, express or implied, including
warranties of performance, merchantability or fitness for any particular
purpose.
+
+License: Apache-2.0
+ Licensed under the Apache License, Version 2.0 (the "License");
+ you may not use this file except in compliance with the License.
+ You may obtain a copy of the License at
+ .
+ http://www.apache.org/licenses/LICENSE-2.0
+ .
+ Unless required by applicable law or agreed to in writing, software
+ distributed under the License is distributed on an "AS IS" BASIS,
+ WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied..
+ See the License for the specific language governing permissions and
+ limitations under the License.
+
+License: LGPL-2+
+ This library is free software; you can redistribute it and/or
+ modify it under the terms of the GNU Library General Public
+ License as published by the Free Software Foundation; either
+ version 2 of the License, or (at your option) any later version.
+ .
+ This library is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
+ Library General Public License for more details.
+ .
+ On Debian systems, a full copy of the LGPL 2 should be available
+ in /usr/share/common-licenses/LGPL-2.
+
+License: LGPL-2.1+
+ This library is free software; you can redistribute it and/or
+ modify it under the terms of the GNU Lesser General Public
+ License as published by the Free Software Foundation; either
+ version 2.1 of the License, or (at your option) any later version.
+ .
+ This library is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
+ Lesser General Public License for more details.
+ .
+ On Debian systems, a full copy of the LGPL 2.1 should be available
+ in /usr/share/common-licenses/LGPL-2.1.
+
+License: Expat
+ Permission is hereby granted, free of charge, to any person obtaining a
+ copy of this software and associated documentation files (the "Software"),
+ to deal in the Software without restriction, including without limitation
+ the rights to use, copy, modify, merge, publish, distribute, sublicense,
+ and/or sell copies of the Software, and to permit persons to whom the
+ Software is furnished to do so, subject to the following conditions:
+ .
+ The above copyright notice and this permission notice shall be included in
+ all copies or substantial portions of the Software.
+ .
+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+ IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+ FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL
+ THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+ LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
+ FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
+ DEALINGS IN THE SOFTWARE.
View it on GitLab: https://salsa.debian.org/med-team/ncbi-igblast/-/compare/ff7ec2ae8a1e3be36542c94e96991ec836133a54...9e44c7572a4cb00630659855968626696a78bacb
--
View it on GitLab: https://salsa.debian.org/med-team/ncbi-igblast/-/compare/ff7ec2ae8a1e3be36542c94e96991ec836133a54...9e44c7572a4cb00630659855968626696a78bacb
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