Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
05f2c253 by Andreas Tille at 2022-05-20T13:42:47+00:00
automatic update
- - - - -
3 changed files:
- debian-med-tests.txt
- debian-science-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,54 +1,54 @@
-Last-Update: Fri, 20 May 2022 01:42:04 +0000
+Last-Update: Fri, 20 May 2022 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 168 | {imaging,covid-19} |
- orthanc | 94 | {imaging,covid-19,practice} |
- orthanc-wsi | 46 | {laboratory,practice,imaging,covid-19,oncology,his} |
+ dcmtk | 171 | {imaging,covid-19} |
+ orthanc | 95 | {imaging,practice,covid-19} |
+ orthanc-wsi | 47 | {his,oncology,practice,laboratory,imaging,covid-19} |
node-shiny-server | 34 | {epi,covid-19} |
- amide | 26 | {imaging} |
- dicomscope | 25 | {imaging} |
- nipype | 24 | {imaging,imaging-dev} |
- dcm2niix | 19 | {imaging} |
+ amide | 27 | {imaging} |
+ nipype | 25 | {imaging,imaging-dev} |
+ dicomscope | 24 | {imaging} |
dicom3tools | 19 | {imaging} |
+ dcm2niix | 18 | {imaging} |
+ orthanc-webviewer | 15 | {imaging} |
openslide | 14 | {imaging-dev} |
- orthanc-webviewer | 14 | {imaging} |
gdcm | 13 | {imaging-dev} |
gnumed-server | 11 | {practice,covid-19} |
invesalius | 10 | {imaging} |
minc-tools | 10 | {imaging} |
mrtrix3 | 10 | {imaging} |
openslide | 10 | {imaging} |
- orthanc-dicomweb | 9 | {covid-19,imaging} |
+ orthanc-dicomweb | 9 | {imaging,covid-19} |
adun.app | 8 | {bio} |
gdcm | 8 | {imaging,covid-19} |
- oscar | 8 | {data,practice,tools} |
+ oscar | 8 | {tools,practice,data} |
+ pixelmed | 8 | {imaging} |
biojava-live | 7 | {bio-dev} |
dicomnifti | 7 | {imaging} |
dicompyler | 7 | {oncology} |
jebl2 | 7 | {bio-dev} |
librg-utils-perl | 7 | {bio} |
- pixelmed | 7 | {imaging} |
+ nifticlib | 7 | {imaging} |
plastimatch | 7 | {imaging} |
libminc | 6 | {imaging-dev} |
- nifticlib | 6 | {imaging} |
nifticlib | 6 | {imaging-dev} |
+ orthanc-postgresql | 6 | {imaging} |
treeview | 6 | {bio,bio-phylogeny} |
getdata | 5 | {bio} |
libncl | 5 | {bio} |
nifti2dicom | 5 | {imaging} |
obitools | 5 | {bio} |
orthanc-mysql | 5 | {imaging} |
- orthanc-postgresql | 5 | {imaging} |
- salmon | 5 | {bio,covid-19} |
+ salmon | 5 | {covid-19,bio} |
canu | 4 | {bio} |
cmtk | 4 | {imaging} |
mia | 4 | {imaging} |
- phyutility | 4 | {cloud,bio} |
+ phyutility | 4 | {bio,cloud} |
sibsim4 | 4 | {cloud,bio} |
stacks | 4 | {bio} |
staden | 4 | {bio} |
- bio-tradis | 3 | {bio-dev,bio} |
+ bio-tradis | 3 | {bio,bio-dev} |
blimps | 3 | {bio} |
fastml | 3 | {bio} |
ghmm | 3 | {bio} |
@@ -57,7 +57,7 @@ Last-Update: Fri, 20 May 2022 01:42:04 +0000
libsbml | 3 | {bio-dev} |
mauve-aligner | 3 | {bio} |
melting | 3 | {bio,cloud} |
- mhap | 3 | {bio-ngs,bio} |
+ mhap | 3 | {bio,bio-ngs} |
orthanc-gdcm | 3 | {imaging} |
piler | 3 | {bio} |
proalign | 3 | {bio,bio-phylogeny} |
@@ -75,14 +75,14 @@ Last-Update: Fri, 20 May 2022 01:42:04 +0000
brig | 2 | {bio} |
clonalframeml | 2 | {bio,covid-19} |
clonalorigin | 2 | {bio} |
- cufflinks | 2 | {bio,cloud} |
+ cufflinks | 2 | {cloud,bio} |
delly | 2 | {covid-19,bio} |
elastix | 2 | {imaging} |
embassy-domainatrix | 2 | {bio,cloud} |
gatb-core | 2 | {bio} |
hinge | 2 | {bio} |
ipig | 2 | {bio} |
- jmodeltest | 2 | {bio,bio-phylogeny} |
+ jmodeltest | 2 | {bio-phylogeny,bio} |
king | 2 | {imaging,typesetting} |
libbio-mage-utils-perl | 2 | {bio-dev} |
libpal-java | 2 | {bio-dev} |
@@ -112,14 +112,14 @@ Last-Update: Fri, 20 May 2022 01:42:04 +0000
biomaj3-cli | 1 | {cloud} |
cat-bat | 1 | {covid-19,bio} |
ctn | 1 | {imaging-dev} |
- dextractor | 1 | {covid-19,bio} |
+ dextractor | 1 | {bio,covid-19} |
embassy-domalign | 1 | {cloud,bio} |
embassy-domsearch | 1 | {cloud,bio} |
emboss-explorer | 1 | {bio} |
emmax | 1 | {bio} |
gatb-core | 1 | {bio-dev} |
gifticlib | 1 | {imaging-dev} |
- htscodecs | 1 | {covid-19,bio-dev} |
+ htscodecs | 1 | {bio-dev,covid-19} |
kmerresistance | 1 | {bio} |
libchado-perl | 1 | {bio-dev} |
libgenome | 1 | {bio-dev} |
@@ -129,7 +129,8 @@ Last-Update: Fri, 20 May 2022 01:42:04 +0000
papyrus | 1 | {imaging-dev} |
pigx-rnaseq | 1 | {covid-19,bio} |
pique | 1 | {bio} |
- pplacer | 1 | {covid-19,bio-phylogeny,bio} |
+ pplacer | 1 | {bio,bio-phylogeny,covid-19} |
+ provean | 1 | {bio} |
seq-gen | 1 | {bio} |
skesa | 1 | {bio} |
srf | 1 | {bio-dev} |
@@ -169,33 +170,33 @@ Last-Update: Fri, 20 May 2022 01:42:04 +0000
libseqlib | 0 | {bio-dev} |
libstatgen | 0 | {bio-dev} |
libvistaio | 0 | {imaging-dev} |
+ megadepth | 0 | {bio} |
metastudent-data | 0 | {bio} |
metastudent-data-2 | 0 | {bio} |
mia | 0 | {imaging-dev} |
miaviewit | 0 | {imaging-dev} |
- milib | 0 | {bio-dev,covid-19} |
+ milib | 0 | {covid-19,bio-dev} |
ncbi-vdb | 0 | {bio-dev} |
nifticlib | 0 | {imaging-dev} |
- opensurgsim | 0 | {imaging-dev} |
orthanc-imagej | 0 | {imaging} |
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
plasmidid | 0 | {covid-19,bio} |
+ python-seqcluster | 0 | {bio-dev,covid-19} |
python-seqcluster | 0 | {bio} |
- python-seqcluster | 0 | {covid-19,bio-dev} |
resfinder-db | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
sight | 0 | {imaging-dev} |
simpleitk | 0 | {imaging-dev} |
- smrtanalysis | 0 | {covid-19,bio} |
- tipp | 0 | {covid-19,bio} |
+ smrtanalysis | 0 | {bio,covid-19} |
+ tipp | 0 | {bio,covid-19} |
varna | 0 | {bio} |
- vienna-rna | 0 | {bio,covid-19} |
+ vienna-rna | 0 | {covid-19,bio} |
xdffileio | 0 | {imaging-dev} |
xxsds-dynamic | 0 | {bio-dev} |
libmaus2 | -1 | {bio-dev,covid-19} |
malt | -1 | {bio} |
megan-ce | -1 | {bio} |
rockhopper | -1 | {bio} |
-(225 rows)
+(226 rows)
=====================================
debian-science-tests.txt
=====================================
@@ -1,32 +1,33 @@
-Last-Update: Fri, 20 May 2022 01:42:04 +0000
+Last-Update: Fri, 20 May 2022 13:42:05 +0000
Source | Vote | Tasks | Tags
-----------------------------------------+--------+----------------------------------------------------------------------------------+--------------------------------------------------------------------
- gts | 2934 | {viewing} |
- sympy | 1623 | {physics,nanoscale-physics} |
- suitesparse | 242 | {mathematics-dev,numericalcomputation} |
- armadillo | 201 | {mathematics-dev} |
- python-pyqtgraph | 120 | {viewing} |
+ gts | 2941 | {viewing} |
+ sympy | 1613 | {physics,nanoscale-physics} |
+ suitesparse | 240 | {mathematics-dev,numericalcomputation} |
+ armadillo | 205 | {mathematics-dev} |
+ python-pyqtgraph | 122 | {viewing} |
atlas | 86 | {mathematics-dev} |
- nltk | 85 | {linguistics} |
- arpack | 76 | {mathematics-dev} |
+ nltk | 83 | {linguistics} |
+ arpack | 77 | {mathematics-dev} |
cypari2 | 52 | {mathematics-dev} |
- arduino-mk | 45 | {robotics} |
- pyzo | 44 | {numericalcomputation} |
- imview | 43 | {viewing} |
- scalapack | 39 | {nanoscale-physics-dev} |
- rubiks | 37 | {geometry,mathematics} |
- fftw | 34 | {mathematics-dev,meteorology-dev,physics-dev} |
- eclib | 32 | {mathematics} |
- flintqs | 31 | {mathematics} |
- sketch | 25 | {typesetting} |
- bossa | 21 | {devices} |
+ arduino-mk | 46 | {robotics} |
+ pyzo | 45 | {numericalcomputation} |
+ imview | 42 | {viewing} |
+ scalapack | 40 | {nanoscale-physics-dev} |
+ rubiks | 39 | {geometry,mathematics} |
+ eclib | 34 | {mathematics} |
+ fftw | 33 | {mathematics-dev,meteorology-dev,physics-dev} |
+ flintqs | 32 | {mathematics} |
+ sketch | 26 | {typesetting} |
+ bossa | 22 | {devices} |
+ cernlib | 22 | {highenergy-physics} |
feedgnuplot | 21 | {viewing} |
libmatio | 21 | {mathematics-dev} |
- cernlib | 20 | {highenergy-physics} |
- flann | 18 | {mathematics-dev,engineering-dev} |
- geg | 18 | {viewing} |
- gts | 18 | {viewing-dev} |
+ flann | 20 | {mathematics-dev,engineering-dev} |
+ geg | 19 | {viewing} |
+ gts | 19 | {viewing-dev} |
+ cernlib | 17 | {highenergy-physics-dev} |
ros-ros-environment | 17 | {robotics-dev} |
fftw | 16 | {mathematics-dev,meteorology-dev,physics-dev} |
guidata | 16 | {dataacquisition-dev} |
@@ -34,24 +35,23 @@ Last-Update: Fri, 20 May 2022 01:42:04 +0000
neuron | 16 | {neuroscience-modeling,highenergy-physics,simulations} |
ntl | 16 | {mathematics-dev} |
auto-07p | 15 | {mathematics} |
- cernlib | 15 | {highenergy-physics-dev} |
coinor-symphony | 15 | {mathematics,logic,numericalcomputation} |
gfsview | 15 | {viewing} |
vitables | 15 | {numericalcomputation} |
matlab-support | 14 | {mathematics,numericalcomputation} |
- ppl | 13 | {numericalcomputation} |
+ mathgl | 13 | {viewing} |
+ picosat | 13 | {logic} |
python-escript | 13 | {numericalcomputation,engineering,simulations} |
form | 12 | {mathematics} |
- mathgl | 12 | {viewing} |
opencascade | 12 | {simulations} |
- picosat | 12 | {logic} |
+ pcl | 12 | {robotics-dev} |
+ ppl | 12 | {numericalcomputation} |
apophenia | 11 | {statistics} |
debian-science | 11 | {nanoscale-physics,mathematics,physics,economics,machine-learning} |
getdp | 11 | {engineering,simulations,mathematics} |
libm4ri | 11 | {mathematics-dev} |
neuron | 11 | {highenergy-physics-dev} |
opticalraytracer | 11 | {physics} |
- pcl | 11 | {robotics-dev} |
polylib | 11 | {mathematics} |
rheolef | 11 | {mathematics} |
toulbar2 | 11 | {mathematics,numericalcomputation,logic,physics} |
@@ -62,19 +62,20 @@ Last-Update: Fri, 20 May 2022 01:42:04 +0000
lrcalc | 9 | {mathematics} |
ros-rosconsole | 9 | {robotics-dev} |
tango | 9 | {dataacquisition} |
- cliquer | 8 | {mathematics} |
debian-science | 8 | {nanoscale-physics,economics,physics,machine-learning} |
ipe-tools | 8 | {typesetting} |
jeuclid | 8 | {viewing,typesetting} |
muparser | 8 | {mathematics-dev} |
+ syrthes | 8 | {engineering} |
tango | 8 | {dataacquisition} |
+ urdfdom-headers | 8 | {robotics-dev} |
astk | 7 | {engineering} |
+ cliquer | 7 | {mathematics} |
debian-science | 7 | {machine-learning,neuroscience-cognitive} |
eclib | 7 | {mathematics-dev} |
psurface | 7 | {numericalcomputation} |
- syrthes | 7 | {engineering} |
- urdfdom-headers | 7 | {robotics-dev} |
code-saturne | 6 | {mathematics-dev,engineering-dev} |
+ dune-istl | 6 | {mathematics-dev} |
dxsamples | 6 | {nanoscale-physics} |
etsf-io | 6 | {nanoscale-physics,physics} |
libcgns | 6 | {engineering} |
@@ -83,12 +84,12 @@ Last-Update: Fri, 20 May 2022 01:42:04 +0000
lrcalc | 6 | {mathematics-dev} |
opencascade | 6 | {simulations} |
scram | 6 | {engineering} |
+ simbody | 6 | {robotics-dev} |
teem | 6 | {imageanalysis} |
cernlib | 5 | {highenergy-physics} |
cimg | 5 | {imageanalysis-dev} | {x11::library}
coinmp | 5 | {numericalcomputation,logic,mathematics-dev} |
debian-science | 5 | {electrophysiology} |
- dune-istl | 5 | {mathematics-dev} |
dune-uggrid | 5 | {mathematics-dev} |
dxflib | 5 | {engineering-dev} |
frog | 5 | {linguistics} |
@@ -98,7 +99,6 @@ Last-Update: Fri, 20 May 2022 01:42:04 +0000
libzn-poly | 5 | {mathematics-dev} |
morse-simulator | 5 | {robotics} |
neuron | 5 | {highenergy-physics-dev} |
- simbody | 5 | {robotics-dev} |
alberta | 4 | {engineering-dev} |
cbflib | 4 | {nanoscale-physics} |
cliquer | 4 | {mathematics-dev} |
@@ -107,7 +107,6 @@ Last-Update: Fri, 20 May 2022 01:42:04 +0000
gf2x | 4 | {mathematics-dev} |
iml | 4 | {mathematics-dev} |
irstlm | 4 | {linguistics} |
- libgtkdatabox | 4 | {engineering-dev,viewing-dev} |
libmatheval | 4 | {mathematics-dev} |
mbt | 4 | {linguistics} |
qd | 4 | {mathematics-dev} |
@@ -119,14 +118,15 @@ Last-Update: Fri, 20 May 2022 01:42:04 +0000
x13as | 4 | {economics} |
apertium-streamparser | 3 | {linguistics} |
cernlib | 3 | {highenergy-physics} |
- coda | 3 | {meteorology-dev} |
coda | 3 | {meteorology} |
- debian-science | 3 | {nanoscale-physics-dev} |
+ coda | 3 | {meteorology-dev} |
debian-science | 3 | {psychophysics} |
+ debian-science | 3 | {nanoscale-physics-dev} |
dune-localfunctions | 3 | {mathematics-dev} |
hpcc | 3 | {numericalcomputation,distributedcomputing} |
ipe-tools | 3 | {typesetting} |
libgetdata | 3 | {dataacquisition-dev} |
+ libgtkdatabox | 3 | {engineering-dev,viewing-dev} |
libhomfly | 3 | {mathematics-dev} |
looptools | 3 | {highenergy-physics} |
mbtserver | 3 | {linguistics} |
@@ -173,15 +173,14 @@ Last-Update: Fri, 20 May 2022 01:42:04 +0000
neartree | 1 | {numericalcomputation,mathematics-dev} |
ompl | 1 | {robotics-dev} |
openctm | 1 | {physics-dev} |
- openigtlink | 1 | {robotics-dev} |
pynac | 1 | {mathematics-dev} |
python-aws-xray-sdk | 1 | {dataacquisition-dev} |
quadrule | 1 | {mathematics-dev} |
ros-opencv-apps | 1 | {robotics} |
ssm | 1 | {nanoscale-physics-dev} |
tamuanova | 1 | {statistics} |
- tango | 1 | {dataacquisition-dev} |
tango | 1 | {dataacquisition} |
+ tango | 1 | {dataacquisition-dev} |
vlfeat | 1 | {imageanalysis-dev} |
apertium-afr-nld | 0 | {linguistics} |
apertium-bel-rus | 0 | {linguistics} |
@@ -208,8 +207,8 @@ Last-Update: Fri, 20 May 2022 01:42:04 +0000
apriltag | 0 | {robotics-dev} |
calculix-ccx-doc | 0 | {simulations,numericalcomputation,engineering} |
calculix-ccx-test | 0 | {simulations,engineering,numericalcomputation} |
- cernlib | 0 | {highenergy-physics} |
cernlib | 0 | {highenergy-physics-dev} |
+ cernlib | 0 | {highenergy-physics} |
cernlib | 0 | {highenergy-physics,physics} |
ckon | 0 | {highenergy-physics-dev} |
clhep | 0 | {highenergy-physics-dev} |
@@ -234,9 +233,10 @@ Last-Update: Fri, 20 May 2022 01:42:04 +0000
mclibs | 0 | {highenergy-physics} |
metis-edf | 0 | {engineering-dev} |
ompl | 0 | {robotics} |
+ openigtlink | 0 | {robotics-dev} |
openturns | 0 | {mathematics,statistics,engineering,meteorology-dev,mathematics-dev,meteorology} |
- openturns | 0 | {engineering-dev,meteorology-dev,mathematics-dev} |
openturns | 0 | {engineering-dev,mathematics-dev,meteorology-dev} |
+ openturns | 0 | {engineering-dev,meteorology-dev,mathematics-dev} |
psurface | 0 | {numericalcomputation} |
python-escript | 0 | {simulations,engineering,numericalcomputation} |
qrupdate | 0 | {mathematics-dev} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/05f2c2530c3cdb0de90e7aa13de4f2dc28d97675
--
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