Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
a175814c by Andreas Tille at 2022-05-26T13:42:28+00:00
automatic update
- - - - -
3 changed files:
- debian-med-tests.txt
- debian-science-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,30 +1,29 @@
-Last-Update: Thu, 26 May 2022 01:42:04 +0000
+Last-Update: Thu, 26 May 2022 13:42:05 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 170 | {imaging,covid-19} |
- orthanc | 94 | {imaging,practice,covid-19} |
- orthanc-wsi | 47 | {his,oncology,practice,laboratory,imaging,covid-19} |
- node-shiny-server | 37 | {epi,covid-19} |
+ dcmtk | 169 | {imaging,covid-19} |
+ orthanc | 92 | {covid-19,imaging,practice} |
+ orthanc-wsi | 46 | {covid-19,oncology,imaging,his,laboratory,practice} |
+ node-shiny-server | 37 | {covid-19,epi} |
amide | 30 | {imaging} |
dicomscope | 26 | {imaging} |
- nipype | 25 | {imaging,imaging-dev} |
- dicom3tools | 20 | {imaging} |
+ nipype | 25 | {imaging-dev,imaging} |
+ dicom3tools | 18 | {imaging} |
orthanc-webviewer | 17 | {imaging} |
- gnumed-server | 13 | {practice,covid-19} |
- invesalius | 11 | {imaging} |
- orthanc-dicomweb | 11 | {imaging,covid-19} |
- minc-tools | 10 | {imaging} |
+ gnumed-server | 13 | {covid-19,practice} |
+ orthanc-dicomweb | 11 | {covid-19,imaging} |
+ invesalius | 10 | {imaging} |
mrtrix3 | 10 | {imaging} |
nifticlib | 9 | {imaging} |
adun.app | 8 | {bio} |
dicomnifti | 8 | {imaging} |
gdcm | 8 | {imaging,covid-19} |
- pixelmed | 8 | {imaging} |
- biojava-live | 7 | {bio-dev} |
gdcm | 7 | {imaging-dev} |
orthanc-postgresql | 7 | {imaging} |
+ pixelmed | 7 | {imaging} |
plastimatch | 7 | {imaging} |
+ biojava-live | 6 | {bio-dev} |
dicompyler | 6 | {oncology} |
jebl2 | 6 | {bio-dev} |
libminc | 6 | {imaging-dev} |
@@ -37,7 +36,7 @@ Last-Update: Thu, 26 May 2022 01:42:04 +0000
orthanc-mysql | 5 | {imaging} |
oscar | 5 | {tools,practice,data} |
salmon | 5 | {covid-19,bio} |
- treeview | 5 | {bio,bio-phylogeny} |
+ treeview | 5 | {bio-phylogeny,bio} |
bio-tradis | 4 | {bio,bio-dev} |
cmtk | 4 | {imaging} |
elastix | 4 | {imaging} |
@@ -46,7 +45,7 @@ Last-Update: Thu, 26 May 2022 01:42:04 +0000
mia | 4 | {imaging} |
nifti2dicom | 4 | {imaging} |
phyutility | 4 | {bio,cloud} |
- sibsim4 | 4 | {cloud,bio} |
+ sibsim4 | 4 | {bio,cloud} |
stacks | 4 | {bio} |
staden | 4 | {bio} |
fastml | 3 | {bio} |
@@ -56,7 +55,6 @@ Last-Update: Thu, 26 May 2022 01:42:04 +0000
mauve-aligner | 3 | {bio} |
melting | 3 | {bio,cloud} |
mhap | 3 | {bio,bio-ngs} |
- orthanc-python | 3 | {covid-19} |
piler | 3 | {bio} |
proalign | 3 | {bio,bio-phylogeny} |
rambo-k | 3 | {bio} |
@@ -73,21 +71,22 @@ Last-Update: Thu, 26 May 2022 01:42:04 +0000
brig | 2 | {bio} |
clonalframeml | 2 | {bio,covid-19} |
clonalorigin | 2 | {bio} |
- cufflinks | 2 | {cloud,bio} |
- delly | 2 | {covid-19,bio} |
+ cufflinks | 2 | {bio,cloud} |
+ delly | 2 | {bio,covid-19} |
embassy-domainatrix | 2 | {bio,cloud} |
emboss-explorer | 2 | {bio} |
gatb-core | 2 | {bio} |
gifticlib | 2 | {imaging-dev} |
hinge | 2 | {bio} |
ipig | 2 | {bio} |
- jmodeltest | 2 | {bio-phylogeny,bio} |
- king | 2 | {imaging,typesetting} |
+ jmodeltest | 2 | {bio,bio-phylogeny} |
+ king | 2 | {typesetting,imaging} |
libbio-mage-utils-perl | 2 | {bio-dev} |
libpal-java | 2 | {bio-dev} |
librdp-taxonomy-tree-java | 2 | {bio-dev} |
metaphlan2 | 2 | {bio} |
opencfu | 2 | {laboratory} |
+ orthanc-python | 2 | {covid-19} |
papyrus | 2 | {imaging-dev} |
placnet | 2 | {bio} |
plasmidseeker | 2 | {bio} |
@@ -97,7 +96,7 @@ Last-Update: Thu, 26 May 2022 01:42:04 +0000
qcumber | 2 | {bio} |
rdp-alignment | 2 | {bio} |
rdp-classifier | 2 | {bio} |
- rtax | 2 | {cloud,bio} |
+ rtax | 2 | {bio,cloud} |
sga | 2 | {bio} |
sift | 2 | {bio} |
soapaligner | 2 | {bio} |
@@ -110,11 +109,11 @@ Last-Update: Thu, 26 May 2022 01:42:04 +0000
tvc | 2 | {bio} |
zalign | 2 | {cloud,bio} |
biomaj3-cli | 1 | {cloud} |
- cat-bat | 1 | {covid-19,bio} |
+ cat-bat | 1 | {bio,covid-19} |
ctn | 1 | {imaging-dev} |
- dextractor | 1 | {bio,covid-19} |
+ dextractor | 1 | {covid-19,bio} |
embassy-domalign | 1 | {cloud,bio} |
- embassy-domsearch | 1 | {cloud,bio} |
+ embassy-domsearch | 1 | {bio,cloud} |
emmax | 1 | {bio} |
gatb-core | 1 | {bio-dev} |
htscodecs | 1 | {bio-dev,covid-19} |
@@ -124,9 +123,9 @@ Last-Update: Thu, 26 May 2022 01:42:04 +0000
libxdf | 1 | {imaging-dev} |
microbegps | 1 | {bio} |
mssstest | 1 | {tools} |
- pigx-rnaseq | 1 | {covid-19,bio} |
+ pigx-rnaseq | 1 | {bio,covid-19} |
pique | 1 | {bio} |
- pplacer | 1 | {bio,bio-phylogeny,covid-19} |
+ pplacer | 1 | {bio,covid-19,bio-phylogeny} |
seq-gen | 1 | {bio} |
skesa | 1 | {bio} |
srf | 1 | {bio-dev} |
@@ -177,7 +176,7 @@ Last-Update: Thu, 26 May 2022 01:42:04 +0000
orthanc-imagej | 0 | {imaging} |
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
- plasmidid | 0 | {covid-19,bio} |
+ plasmidid | 0 | {bio,covid-19} |
provean | 0 | {bio} |
python-seqcluster | 0 | {bio-dev,covid-19} |
python-seqcluster | 0 | {bio} |
@@ -185,8 +184,8 @@ Last-Update: Thu, 26 May 2022 01:42:04 +0000
sbmltoolbox | 0 | {bio-dev} |
sight | 0 | {imaging-dev} |
simpleitk | 0 | {imaging-dev} |
- smrtanalysis | 0 | {bio,covid-19} |
- tipp | 0 | {bio,covid-19} |
+ smrtanalysis | 0 | {covid-19,bio} |
+ tipp | 0 | {covid-19,bio} |
varna | 0 | {bio} |
vienna-rna | 0 | {covid-19,bio} |
xdffileio | 0 | {imaging-dev} |
@@ -195,5 +194,5 @@ Last-Update: Thu, 26 May 2022 01:42:04 +0000
malt | -1 | {bio} |
megan-ce | -1 | {bio} |
rockhopper | -1 | {bio} |
-(223 rows)
+(222 rows)
=====================================
debian-science-tests.txt
=====================================
@@ -1,91 +1,91 @@
-Last-Update: Thu, 26 May 2022 01:42:04 +0000
+Last-Update: Thu, 26 May 2022 13:42:06 +0000
Source | Vote | Tasks | Tags
-----------------------------------------+--------+----------------------------------------------------------------------------------+--------------------------------------------------------------------
- gts | 2904 | {viewing} |
- sympy | 1638 | {physics,nanoscale-physics} |
- suitesparse | 233 | {mathematics-dev,numericalcomputation} |
- armadillo | 197 | {mathematics-dev} |
- python-pyqtgraph | 122 | {viewing} |
- atlas | 88 | {mathematics-dev} |
- nltk | 84 | {linguistics} |
- arpack | 73 | {mathematics-dev} |
- cypari2 | 49 | {mathematics-dev} |
- pyzo | 48 | {numericalcomputation} |
- arduino-mk | 44 | {robotics} |
- imview | 42 | {viewing} |
+ gts | 2913 | {viewing} |
+ sympy | 1678 | {physics,nanoscale-physics} |
+ suitesparse | 231 | {mathematics-dev,numericalcomputation} |
+ armadillo | 196 | {mathematics-dev} |
+ python-pyqtgraph | 124 | {viewing} |
+ atlas | 90 | {mathematics-dev} |
+ nltk | 82 | {linguistics} |
+ arpack | 72 | {mathematics-dev} |
+ pyzo | 50 | {numericalcomputation} |
+ cypari2 | 48 | {mathematics-dev} |
+ arduino-mk | 43 | {robotics} |
+ imview | 43 | {viewing} |
+ rubiks | 40 | {geometry,mathematics} |
scalapack | 39 | {nanoscale-physics-dev} |
- rubiks | 35 | {geometry,mathematics} |
- fftw | 34 | {mathematics-dev,meteorology-dev,physics-dev} |
- eclib | 32 | {mathematics} |
- flintqs | 31 | {mathematics} |
- sketch | 27 | {typesetting} |
+ fftw | 36 | {mathematics-dev,meteorology-dev,physics-dev} |
+ eclib | 35 | {mathematics} |
+ flintqs | 34 | {mathematics} |
+ sketch | 28 | {typesetting} |
bossa | 22 | {devices} |
cernlib | 22 | {highenergy-physics} |
- libmatio | 22 | {mathematics-dev} |
- feedgnuplot | 19 | {viewing} |
+ feedgnuplot | 20 | {viewing} |
+ libmatio | 20 | {mathematics-dev} |
flann | 18 | {mathematics-dev,engineering-dev} |
geg | 18 | {viewing} |
gts | 18 | {viewing-dev} |
ntl | 18 | {mathematics-dev} |
fftw | 17 | {mathematics-dev,meteorology-dev,physics-dev} |
cernlib | 16 | {highenergy-physics-dev} |
- ros-ros-environment | 15 | {robotics-dev} |
- vitables | 15 | {numericalcomputation} |
- auto-07p | 14 | {mathematics} |
+ auto-07p | 15 | {mathematics} |
coinor-symphony | 14 | {mathematics,logic,numericalcomputation} |
+ guidata | 14 | {dataacquisition-dev} |
guiqwt | 14 | {numericalcomputation,viewing} |
- matlab-support | 14 | {mathematics,numericalcomputation} |
neuron | 14 | {neuroscience-modeling,highenergy-physics,simulations} |
ppl | 14 | {numericalcomputation} |
+ vitables | 14 | {numericalcomputation} |
gfsview | 13 | {viewing} |
- guidata | 13 | {dataacquisition-dev} |
- mathgl | 13 | {viewing} |
+ matlab-support | 13 | {mathematics,numericalcomputation} |
picosat | 13 | {logic} |
+ python-escript | 13 | {numericalcomputation,engineering,simulations} |
+ ros-ros-environment | 13 | {robotics-dev} |
libm4ri | 12 | {mathematics-dev} |
+ mathgl | 12 | {viewing} |
opencascade | 12 | {simulations} |
- python-escript | 12 | {numericalcomputation,engineering,simulations} |
+ opticalraytracer | 12 | {physics} |
+ polylib | 12 | {mathematics} |
rheolef | 12 | {mathematics} |
+ apophenia | 11 | {statistics} |
debian-science | 11 | {nanoscale-physics,mathematics,physics,economics,machine-learning} |
form | 11 | {mathematics} |
+ getdp | 11 | {engineering,simulations,mathematics} |
lxi-tools | 11 | {engineering,dataacquisition} |
- opticalraytracer | 11 | {physics} |
pcl | 11 | {robotics-dev} |
- polylib | 11 | {mathematics} |
- apophenia | 10 | {statistics} |
- getdp | 10 | {engineering,simulations,mathematics} |
- ros-rosconsole | 10 | {robotics-dev} |
debian-science | 9 | {physics,nanoscale-physics,economics,statistics} |
ipe-tools | 9 | {typesetting} |
neuron | 9 | {highenergy-physics-dev} |
+ ros-rosconsole | 9 | {robotics-dev} |
syrthes | 9 | {engineering} |
tango | 9 | {dataacquisition} |
toulbar2 | 9 | {mathematics,numericalcomputation,logic,physics} |
+ ucto | 9 | {linguistics} |
+ uctodata | 9 | {linguistics} |
cliquer | 8 | {mathematics} |
debian-science | 8 | {nanoscale-physics,economics,physics,machine-learning} |
debian-science | 8 | {machine-learning,neuroscience-cognitive} |
jeuclid | 8 | {viewing,typesetting} |
lrcalc | 8 | {mathematics} |
muparser | 8 | {mathematics-dev} |
- ucto | 8 | {linguistics} |
- uctodata | 8 | {linguistics} |
astk | 7 | {engineering} |
dune-istl | 7 | {mathematics-dev} |
dune-uggrid | 7 | {mathematics-dev} |
eclib | 7 | {mathematics-dev} |
libcgns | 7 | {engineering} |
+ libvigraimpex | 7 | {imageanalysis-dev,machine-learning} |
psurface | 7 | {numericalcomputation} |
scram | 7 | {engineering} |
- tango | 7 | {dataacquisition} |
alberta | 6 | {engineering-dev} |
cernlib | 6 | {highenergy-physics} |
dxsamples | 6 | {nanoscale-physics} |
libm4rie | 6 | {mathematics-dev} |
libmatheval | 6 | {mathematics} |
- libvigraimpex | 6 | {imageanalysis-dev,machine-learning} |
libzn-poly | 6 | {mathematics-dev} |
lrcalc | 6 | {mathematics-dev} |
opencascade | 6 | {simulations} |
+ tango | 6 | {dataacquisition} |
urdfdom-headers | 6 | {robotics-dev} |
cliquer | 5 | {mathematics-dev} |
code-saturne | 5 | {mathematics-dev,engineering-dev} |
@@ -93,34 +93,34 @@ Last-Update: Thu, 26 May 2022 01:42:04 +0000
debian-science | 5 | {electrophysiology} |
dxflib | 5 | {engineering-dev} |
etsf-io | 5 | {nanoscale-physics,physics} |
+ frog | 5 | {linguistics} |
iml | 5 | {mathematics-dev} |
+ libgetdata | 5 | {dataacquisition} |
morse-simulator | 5 | {robotics} |
- neuron | 5 | {highenergy-physics-dev} |
simbody | 5 | {robotics-dev} |
teem | 5 | {imageanalysis} |
cbflib | 4 | {nanoscale-physics} |
cimg | 4 | {imageanalysis-dev} | {x11::library}
debian-science | 4 | {tools} |
dune-localfunctions | 4 | {mathematics-dev} |
- frog | 4 | {linguistics} |
gf2x | 4 | {mathematics-dev} |
- libgetdata | 4 | {dataacquisition} |
+ irstlm | 4 | {linguistics} |
libhomfly | 4 | {mathematics-dev} |
libitpp | 4 | {mathematics-dev,engineering-dev} |
libmatheval | 4 | {mathematics-dev} |
+ neuron | 4 | {highenergy-physics-dev} |
qd | 4 | {mathematics-dev} |
ratpoints | 4 | {mathematics-dev} |
apertium-streamparser | 3 | {linguistics} |
cernlib | 3 | {highenergy-physics} |
- coda | 3 | {meteorology} |
coda | 3 | {meteorology-dev} |
- debian-science | 3 | {electrophysiology} |
+ coda | 3 | {meteorology} |
debian-science | 3 | {psychophysics} |
debian-science | 3 | {nanoscale-physics-dev} |
+ debian-science | 3 | {electrophysiology} |
dimbl | 3 | {linguistics} |
hpcc | 3 | {numericalcomputation,distributedcomputing} |
ipe-tools | 3 | {typesetting} |
- irstlm | 3 | {linguistics} |
libgetdata | 3 | {dataacquisition-dev} |
libgtkdatabox | 3 | {engineering-dev,viewing-dev} |
looptools | 3 | {highenergy-physics} |
@@ -178,8 +178,8 @@ Last-Update: Thu, 26 May 2022 01:42:04 +0000
ros-opencv-apps | 1 | {robotics} |
ssm | 1 | {nanoscale-physics-dev} |
tamuanova | 1 | {statistics} |
- tango | 1 | {dataacquisition} |
tango | 1 | {dataacquisition-dev} |
+ tango | 1 | {dataacquisition} |
vlfeat | 1 | {imageanalysis-dev} |
apertium-afr-nld | 0 | {linguistics} |
apertium-bel-rus | 0 | {linguistics} |
@@ -206,8 +206,8 @@ Last-Update: Thu, 26 May 2022 01:42:04 +0000
apriltag | 0 | {robotics-dev} |
calculix-ccx-doc | 0 | {simulations,numericalcomputation,engineering} |
calculix-ccx-test | 0 | {simulations,engineering,numericalcomputation} |
- cernlib | 0 | {highenergy-physics-dev} |
cernlib | 0 | {highenergy-physics,physics} |
+ cernlib | 0 | {highenergy-physics-dev} |
cernlib | 0 | {highenergy-physics} |
ckon | 0 | {highenergy-physics-dev} |
clhep | 0 | {highenergy-physics-dev} |
@@ -219,8 +219,8 @@ Last-Update: Thu, 26 May 2022 01:42:04 +0000
fastjet | 0 | {highenergy-physics-dev} |
frogdata | 0 | {linguistics} |
glpk-java | 0 | {mathematics-dev} |
- jhdf | 0 | {engineering-dev} |
jhdf | 0 | {engineering} |
+ jhdf | 0 | {engineering-dev} |
libdogleg | 0 | {mathematics-dev} |
libfolia | 0 | {linguistics} |
libgetdata | 0 | {dataacquisition-dev} |
@@ -235,14 +235,14 @@ Last-Update: Thu, 26 May 2022 01:42:04 +0000
ompl | 0 | {robotics} |
openigtlink | 0 | {robotics-dev} |
openturns | 0 | {mathematics,statistics,engineering,meteorology-dev,mathematics-dev,meteorology} |
- openturns | 0 | {engineering-dev,meteorology-dev,mathematics-dev} |
openturns | 0 | {engineering-dev,mathematics-dev,meteorology-dev} |
+ openturns | 0 | {engineering-dev,meteorology-dev,mathematics-dev} |
psurface | 0 | {numericalcomputation} |
python-escript | 0 | {simulations,engineering,numericalcomputation} |
qrupdate | 0 | {mathematics-dev} |
robot-testing-framework | 0 | {robotics-dev} |
- ros-metapackages | 0 | {robotics-dev} |
ros-metapackages | 0 | {robotics} |
+ ros-metapackages | 0 | {robotics-dev} |
sagemath-database-combinatorial-designs | 0 | {mathematics} |
sagemath-database-conway-polynomials | 0 | {mathematics} |
sagemath-database-elliptic-curves | 0 | {mathematics} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/a175814c5002c73d4a7051d5c12f3da8e168f30d
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