Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
93e192f4 by Andreas Tille at 2022-05-27T13:42:23+00:00
automatic update
- - - - -
3 changed files:
- debian-med-tests.txt
- debian-science-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,29 +1,29 @@
-Last-Update: Fri, 27 May 2022 01:42:04 +0000
+Last-Update: Fri, 27 May 2022 13:42:05 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 169 | {imaging,covid-19} |
- orthanc | 92 | {covid-19,imaging,practice} |
- orthanc-wsi | 46 | {covid-19,oncology,imaging,his,laboratory,practice} |
- node-shiny-server | 37 | {covid-19,epi} |
+ dcmtk | 167 | {imaging,covid-19} |
+ orthanc | 90 | {covid-19,imaging,practice} |
+ orthanc-wsi | 45 | {covid-19,oncology,imaging,his,laboratory,practice} |
+ node-shiny-server | 36 | {covid-19,epi} |
amide | 30 | {imaging} |
- dicomscope | 26 | {imaging} |
- nipype | 25 | {imaging-dev,imaging} |
+ dicomscope | 27 | {imaging} |
+ nipype | 26 | {imaging-dev,imaging} |
dicom3tools | 18 | {imaging} |
orthanc-webviewer | 17 | {imaging} |
gnumed-server | 13 | {covid-19,practice} |
- orthanc-dicomweb | 11 | {covid-19,imaging} |
invesalius | 10 | {imaging} |
mrtrix3 | 10 | {imaging} |
+ orthanc-dicomweb | 10 | {covid-19,imaging} |
nifticlib | 9 | {imaging} |
adun.app | 8 | {bio} |
+ biojava-live | 8 | {bio-dev} |
dicomnifti | 8 | {imaging} |
+ gdcm | 8 | {imaging-dev} |
gdcm | 8 | {imaging,covid-19} |
- gdcm | 7 | {imaging-dev} |
- orthanc-postgresql | 7 | {imaging} |
+ orthanc-postgresql | 8 | {imaging} |
pixelmed | 7 | {imaging} |
plastimatch | 7 | {imaging} |
- biojava-live | 6 | {bio-dev} |
dicompyler | 6 | {oncology} |
jebl2 | 6 | {bio-dev} |
libminc | 6 | {imaging-dev} |
@@ -50,6 +50,7 @@ Last-Update: Fri, 27 May 2022 01:42:04 +0000
staden | 4 | {bio} |
fastml | 3 | {bio} |
ghmm | 3 | {bio} |
+ king | 3 | {typesetting,imaging} |
lamarc | 3 | {bio} |
libsbml | 3 | {bio-dev} |
mauve-aligner | 3 | {bio} |
@@ -57,6 +58,8 @@ Last-Update: Fri, 27 May 2022 01:42:04 +0000
mhap | 3 | {bio,bio-ngs} |
piler | 3 | {bio} |
proalign | 3 | {bio,bio-phylogeny} |
+ pymia | 3 | {imaging-dev} |
+ python-wdlparse | 3 | {bio-dev} |
rambo-k | 3 | {bio} |
runcircos-gui | 3 | {bio} |
saint | 3 | {bio} |
@@ -66,6 +69,7 @@ Last-Update: Fri, 27 May 2022 01:42:04 +0000
assemblytics | 2 | {bio} |
bart-view | 2 | {imaging} |
beast-mcmc | 2 | {bio,bio-phylogeny} |
+ biomaj3-cli | 2 | {cloud} |
bitseq | 2 | {bio} |
blimps | 2 | {bio} |
brig | 2 | {bio} |
@@ -80,7 +84,6 @@ Last-Update: Fri, 27 May 2022 01:42:04 +0000
hinge | 2 | {bio} |
ipig | 2 | {bio} |
jmodeltest | 2 | {bio,bio-phylogeny} |
- king | 2 | {typesetting,imaging} |
libbio-mage-utils-perl | 2 | {bio-dev} |
libpal-java | 2 | {bio-dev} |
librdp-taxonomy-tree-java | 2 | {bio-dev} |
@@ -91,8 +94,6 @@ Last-Update: Fri, 27 May 2022 01:42:04 +0000
placnet | 2 | {bio} |
plasmidseeker | 2 | {bio} |
pscan-chip | 2 | {bio} |
- pymia | 2 | {imaging-dev} |
- python-wdlparse | 2 | {bio-dev} |
qcumber | 2 | {bio} |
rdp-alignment | 2 | {bio} |
rdp-classifier | 2 | {bio} |
@@ -108,14 +109,13 @@ Last-Update: Fri, 27 May 2022 01:42:04 +0000
tracetuner | 2 | {bio} |
tvc | 2 | {bio} |
zalign | 2 | {cloud,bio} |
- biomaj3-cli | 1 | {cloud} |
+ acedb | 1 | {bio,cloud} |
cat-bat | 1 | {bio,covid-19} |
ctn | 1 | {imaging-dev} |
dextractor | 1 | {covid-19,bio} |
embassy-domalign | 1 | {cloud,bio} |
embassy-domsearch | 1 | {bio,cloud} |
emmax | 1 | {bio} |
- gatb-core | 1 | {bio-dev} |
htscodecs | 1 | {bio-dev,covid-19} |
kmerresistance | 1 | {bio} |
libchado-perl | 1 | {bio-dev} |
@@ -126,13 +126,13 @@ Last-Update: Fri, 27 May 2022 01:42:04 +0000
pigx-rnaseq | 1 | {bio,covid-19} |
pique | 1 | {bio} |
pplacer | 1 | {bio,covid-19,bio-phylogeny} |
+ python-seqcluster | 1 | {bio-dev,covid-19} |
seq-gen | 1 | {bio} |
skesa | 1 | {bio} |
srf | 1 | {bio-dev} |
thesias | 1 | {bio,covid-19} |
tophat-recondition | 1 | {covid-19,bio} |
varscan | 1 | {bio,covid-19} |
- acedb | 0 | {bio,cloud} |
bambamc | 0 | {bio-dev} |
biojava4-live | 0 | {bio-dev} |
biosyntax | 0 | {bio} |
@@ -141,6 +141,7 @@ Last-Update: Fri, 27 May 2022 01:42:04 +0000
eegdev | 0 | {imaging-dev} |
emperor | 0 | {bio} |
fis-gtm | 0 | {his} |
+ gatb-core | 0 | {bio-dev} |
insighttoolkit5 | 0 | {imaging-dev} |
libbigwig | 0 | {bio-dev} |
libbioparser-dev | 0 | {bio-dev} |
@@ -178,7 +179,6 @@ Last-Update: Fri, 27 May 2022 01:42:04 +0000
pbseqlib | 0 | {bio-dev} |
plasmidid | 0 | {bio,covid-19} |
provean | 0 | {bio} |
- python-seqcluster | 0 | {bio-dev,covid-19} |
python-seqcluster | 0 | {bio} |
resfinder-db | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
=====================================
debian-science-tests.txt
=====================================
@@ -1,47 +1,47 @@
-Last-Update: Fri, 27 May 2022 01:42:04 +0000
+Last-Update: Fri, 27 May 2022 13:42:06 +0000
Source | Vote | Tasks | Tags
-----------------------------------------+--------+----------------------------------------------------------------------------------+--------------------------------------------------------------------
- gts | 2913 | {viewing} |
- sympy | 1678 | {physics,nanoscale-physics} |
- suitesparse | 231 | {mathematics-dev,numericalcomputation} |
- armadillo | 196 | {mathematics-dev} |
- python-pyqtgraph | 124 | {viewing} |
- atlas | 90 | {mathematics-dev} |
- nltk | 82 | {linguistics} |
- arpack | 72 | {mathematics-dev} |
+ gts | 2902 | {viewing} |
+ sympy | 1696 | {physics,nanoscale-physics} |
+ suitesparse | 225 | {mathematics-dev,numericalcomputation} |
+ armadillo | 191 | {mathematics-dev} |
+ python-pyqtgraph | 125 | {viewing} |
+ atlas | 91 | {mathematics-dev} |
+ nltk | 83 | {linguistics} |
+ arpack | 70 | {mathematics-dev} |
pyzo | 50 | {numericalcomputation} |
- cypari2 | 48 | {mathematics-dev} |
- arduino-mk | 43 | {robotics} |
+ cypari2 | 49 | {mathematics-dev} |
+ arduino-mk | 45 | {robotics} |
imview | 43 | {viewing} |
- rubiks | 40 | {geometry,mathematics} |
- scalapack | 39 | {nanoscale-physics-dev} |
+ rubiks | 41 | {geometry,mathematics} |
+ scalapack | 38 | {nanoscale-physics-dev} |
+ eclib | 36 | {mathematics} |
fftw | 36 | {mathematics-dev,meteorology-dev,physics-dev} |
- eclib | 35 | {mathematics} |
- flintqs | 34 | {mathematics} |
+ flintqs | 35 | {mathematics} |
sketch | 28 | {typesetting} |
- bossa | 22 | {devices} |
cernlib | 22 | {highenergy-physics} |
+ bossa | 21 | {devices} |
feedgnuplot | 20 | {viewing} |
libmatio | 20 | {mathematics-dev} |
- flann | 18 | {mathematics-dev,engineering-dev} |
- geg | 18 | {viewing} |
+ geg | 19 | {viewing} |
gts | 18 | {viewing-dev} |
ntl | 18 | {mathematics-dev} |
fftw | 17 | {mathematics-dev,meteorology-dev,physics-dev} |
+ flann | 17 | {mathematics-dev,engineering-dev} |
+ auto-07p | 16 | {mathematics} |
cernlib | 16 | {highenergy-physics-dev} |
- auto-07p | 15 | {mathematics} |
+ guidata | 15 | {dataacquisition-dev} |
+ guiqwt | 15 | {numericalcomputation,viewing} |
+ neuron | 15 | {neuroscience-modeling,highenergy-physics,simulations} |
coinor-symphony | 14 | {mathematics,logic,numericalcomputation} |
- guidata | 14 | {dataacquisition-dev} |
- guiqwt | 14 | {numericalcomputation,viewing} |
- neuron | 14 | {neuroscience-modeling,highenergy-physics,simulations} |
+ picosat | 14 | {logic} |
ppl | 14 | {numericalcomputation} |
- vitables | 14 | {numericalcomputation} |
gfsview | 13 | {viewing} |
matlab-support | 13 | {mathematics,numericalcomputation} |
- picosat | 13 | {logic} |
python-escript | 13 | {numericalcomputation,engineering,simulations} |
ros-ros-environment | 13 | {robotics-dev} |
+ vitables | 13 | {numericalcomputation} |
libm4ri | 12 | {mathematics-dev} |
mathgl | 12 | {viewing} |
opencascade | 12 | {simulations} |
@@ -53,11 +53,11 @@ Last-Update: Fri, 27 May 2022 01:42:04 +0000
form | 11 | {mathematics} |
getdp | 11 | {engineering,simulations,mathematics} |
lxi-tools | 11 | {engineering,dataacquisition} |
- pcl | 11 | {robotics-dev} |
+ neuron | 10 | {highenergy-physics-dev} |
+ pcl | 10 | {robotics-dev} |
+ ros-rosconsole | 10 | {robotics-dev} |
debian-science | 9 | {physics,nanoscale-physics,economics,statistics} |
ipe-tools | 9 | {typesetting} |
- neuron | 9 | {highenergy-physics-dev} |
- ros-rosconsole | 9 | {robotics-dev} |
syrthes | 9 | {engineering} |
tango | 9 | {dataacquisition} |
toulbar2 | 9 | {mathematics,numericalcomputation,logic,physics} |
@@ -80,10 +80,12 @@ Last-Update: Fri, 27 May 2022 01:42:04 +0000
alberta | 6 | {engineering-dev} |
cernlib | 6 | {highenergy-physics} |
dxsamples | 6 | {nanoscale-physics} |
+ frog | 6 | {linguistics} |
libm4rie | 6 | {mathematics-dev} |
libmatheval | 6 | {mathematics} |
libzn-poly | 6 | {mathematics-dev} |
lrcalc | 6 | {mathematics-dev} |
+ morse-simulator | 6 | {robotics} |
opencascade | 6 | {simulations} |
tango | 6 | {dataacquisition} |
urdfdom-headers | 6 | {robotics-dev} |
@@ -93,10 +95,8 @@ Last-Update: Fri, 27 May 2022 01:42:04 +0000
debian-science | 5 | {electrophysiology} |
dxflib | 5 | {engineering-dev} |
etsf-io | 5 | {nanoscale-physics,physics} |
- frog | 5 | {linguistics} |
iml | 5 | {mathematics-dev} |
libgetdata | 5 | {dataacquisition} |
- morse-simulator | 5 | {robotics} |
simbody | 5 | {robotics-dev} |
teem | 5 | {imageanalysis} |
cbflib | 4 | {nanoscale-physics} |
@@ -104,6 +104,7 @@ Last-Update: Fri, 27 May 2022 01:42:04 +0000
debian-science | 4 | {tools} |
dune-localfunctions | 4 | {mathematics-dev} |
gf2x | 4 | {mathematics-dev} |
+ hpcc | 4 | {numericalcomputation,distributedcomputing} |
irstlm | 4 | {linguistics} |
libhomfly | 4 | {mathematics-dev} |
libitpp | 4 | {mathematics-dev,engineering-dev} |
@@ -111,6 +112,7 @@ Last-Update: Fri, 27 May 2022 01:42:04 +0000
neuron | 4 | {highenergy-physics-dev} |
qd | 4 | {mathematics-dev} |
ratpoints | 4 | {mathematics-dev} |
+ taurus | 4 | {dataacquisition} |
apertium-streamparser | 3 | {linguistics} |
cernlib | 3 | {highenergy-physics} |
coda | 3 | {meteorology-dev} |
@@ -119,7 +121,6 @@ Last-Update: Fri, 27 May 2022 01:42:04 +0000
debian-science | 3 | {nanoscale-physics-dev} |
debian-science | 3 | {electrophysiology} |
dimbl | 3 | {linguistics} |
- hpcc | 3 | {numericalcomputation,distributedcomputing} |
ipe-tools | 3 | {typesetting} |
libgetdata | 3 | {dataacquisition-dev} |
libgtkdatabox | 3 | {engineering-dev,viewing-dev} |
@@ -128,9 +129,10 @@ Last-Update: Fri, 27 May 2022 01:42:04 +0000
metis-edf | 3 | {numericalcomputation,engineering} |
openmx | 3 | {physics,nanoscale-physics} |
openstereogram | 3 | {tools} |
+ pycollada | 3 | {engineering-dev} |
qwtplot3d | 3 | {viewing-dev} |
sac2mseed | 3 | {geography} |
- taurus | 3 | {dataacquisition} |
+ sardana | 3 | {dataacquisition} |
timbl | 3 | {linguistics} |
timblserver | 3 | {linguistics} |
x13as | 3 | {economics} |
@@ -139,19 +141,16 @@ Last-Update: Fri, 27 May 2022 01:42:04 +0000
cernlib | 2 | {highenergy-physics} |
clhep | 2 | {highenergy-physics-dev} |
clipper | 2 | {nanoscale-physics-dev} |
- debian-science | 2 | {physics} |
debian-science | 2 | {economics} |
+ debian-science | 2 | {physics} |
fastjet | 2 | {highenergy-physics-dev} |
harp | 2 | {meteorology} |
libccp4 | 2 | {nanoscale-physics-dev} |
libcgns | 2 | {engineering-dev} |
- libgetdata | 2 | {dataacquisition-dev} |
liblbfgs | 2 | {mathematics-dev} |
looptools | 2 | {highenergy-physics-dev} |
mbtserver | 2 | {linguistics} |
newmat | 2 | {mathematics-dev} |
- pycollada | 2 | {engineering-dev} |
- sardana | 2 | {dataacquisition} |
sparskit | 2 | {mathematics-dev} |
ssm | 2 | {nanoscale-physics} |
tango | 2 | {dataacquisition-dev} |
@@ -168,6 +167,7 @@ Last-Update: Fri, 27 May 2022 01:42:04 +0000
itsol | 1 | {mathematics-dev} |
liblxi | 1 | {dataacquisition-dev,engineering-dev} |
liborigin2 | 1 | {viewing-dev} |
+ libvigraimpex | 1 | {imageanalysis-dev,machine-learning} |
libxsmm | 1 | {mathematics-dev} |
neartree | 1 | {numericalcomputation,mathematics-dev} |
ompl | 1 | {robotics-dev} |
@@ -178,8 +178,8 @@ Last-Update: Fri, 27 May 2022 01:42:04 +0000
ros-opencv-apps | 1 | {robotics} |
ssm | 1 | {nanoscale-physics-dev} |
tamuanova | 1 | {statistics} |
- tango | 1 | {dataacquisition-dev} |
tango | 1 | {dataacquisition} |
+ tango | 1 | {dataacquisition-dev} |
vlfeat | 1 | {imageanalysis-dev} |
apertium-afr-nld | 0 | {linguistics} |
apertium-bel-rus | 0 | {linguistics} |
@@ -206,9 +206,9 @@ Last-Update: Fri, 27 May 2022 01:42:04 +0000
apriltag | 0 | {robotics-dev} |
calculix-ccx-doc | 0 | {simulations,numericalcomputation,engineering} |
calculix-ccx-test | 0 | {simulations,engineering,numericalcomputation} |
+ cernlib | 0 | {highenergy-physics} |
cernlib | 0 | {highenergy-physics,physics} |
cernlib | 0 | {highenergy-physics-dev} |
- cernlib | 0 | {highenergy-physics} |
ckon | 0 | {highenergy-physics-dev} |
clhep | 0 | {highenergy-physics-dev} |
coda | 0 | {meteorology-dev} |
@@ -219,15 +219,14 @@ Last-Update: Fri, 27 May 2022 01:42:04 +0000
fastjet | 0 | {highenergy-physics-dev} |
frogdata | 0 | {linguistics} |
glpk-java | 0 | {mathematics-dev} |
- jhdf | 0 | {engineering} |
jhdf | 0 | {engineering-dev} |
+ jhdf | 0 | {engineering} |
libdogleg | 0 | {mathematics-dev} |
libfolia | 0 | {linguistics} |
libgetdata | 0 | {dataacquisition-dev} |
libquantum | 0 | {numericalcomputation} |
librsl | 0 | {meteorology-dev} |
libsdsl | 0 | {dataacquisition-dev} |
- libvigraimpex | 0 | {imageanalysis-dev,machine-learning} |
looptools | 0 | {highenergy-physics-dev} |
mclibs | 0 | {highenergy-physics} |
metis-edf | 0 | {engineering-dev} |
@@ -235,14 +234,14 @@ Last-Update: Fri, 27 May 2022 01:42:04 +0000
ompl | 0 | {robotics} |
openigtlink | 0 | {robotics-dev} |
openturns | 0 | {mathematics,statistics,engineering,meteorology-dev,mathematics-dev,meteorology} |
- openturns | 0 | {engineering-dev,mathematics-dev,meteorology-dev} |
openturns | 0 | {engineering-dev,meteorology-dev,mathematics-dev} |
+ openturns | 0 | {engineering-dev,mathematics-dev,meteorology-dev} |
psurface | 0 | {numericalcomputation} |
python-escript | 0 | {simulations,engineering,numericalcomputation} |
qrupdate | 0 | {mathematics-dev} |
robot-testing-framework | 0 | {robotics-dev} |
- ros-metapackages | 0 | {robotics} |
ros-metapackages | 0 | {robotics-dev} |
+ ros-metapackages | 0 | {robotics} |
sagemath-database-combinatorial-designs | 0 | {mathematics} |
sagemath-database-conway-polynomials | 0 | {mathematics} |
sagemath-database-elliptic-curves | 0 | {mathematics} |
@@ -254,5 +253,5 @@ Last-Update: Fri, 27 May 2022 01:42:04 +0000
triangle | 0 | {physics-dev} |
trilinos | 0 | {physics-dev,mathematics-dev,engineering-dev} |
visp-images | 0 | {robotics-dev} |
-(286 rows)
+(285 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/93e192f46d497f38adba2ac6a6031826e988825f
--
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