[med-svn] [Git][med-team/hyphy][master] 5 commits: routine-update: New upstream version

[Étienne Mollier (@emollier)]

Étienne Mollier pushed to branch master at Debian Med / hyphy


Commits:
4f3016b7 by Étienne Mollier at 2022-05-31T19:37:20+02:00
routine-update: New upstream version

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9c72fc4c by Étienne Mollier at 2022-05-31T19:37:32+02:00
New upstream version 2.5.39+dfsg
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1077831d by Étienne Mollier at 2022-05-31T19:37:38+02:00
Update upstream source from tag 'upstream/2.5.39+dfsg'

Update to upstream version '2.5.39+dfsg'
with Debian dir d3ba255bda616ba53bca9d2046718e9fc8997326
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b4f08d2b by Étienne Mollier at 2022-05-31T19:37:39+02:00
routine-update: Standards-Version: 4.6.1

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70295574 by Étienne Mollier at 2022-05-31T19:55:13+02:00
ready to upload to unstable

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30 changed files:

- CMakeLists.txt
- debian/changelog
- debian/control
- res/TemplateBatchFiles/BGM.bf
- res/TemplateBatchFiles/CleanStopCodons.bf
- res/TemplateBatchFiles/GARD.bf
- res/TemplateBatchFiles/SelectionAnalyses/BUSTED.bf
- res/TemplateBatchFiles/SelectionAnalyses/PRIME.bf
- res/TemplateBatchFiles/SelectionAnalyses/RELAX.bf
- res/TemplateBatchFiles/SelectionAnalyses/modules/io_functions.ibf
- res/TemplateBatchFiles/SelectionAnalyses/modules/shared-load-file.bf
- res/TemplateBatchFiles/libv3/IOFunctions.bf
- res/TemplateBatchFiles/libv3/UtilityFunctions.bf
- res/TemplateBatchFiles/libv3/models/parameters.bf
- res/TemplateBatchFiles/libv3/tasks/ancestral.bf
- res/TemplateBatchFiles/libv3/tasks/estimators.bf
- res/TemplateBatchFiles/libv3/tasks/trees.bf
- src/core/associative_list.cpp
- src/core/avllistx.cpp
- src/core/batchlan.cpp
- src/core/batchlan2.cpp
- src/core/batchlanruntime.cpp
- src/core/calcnode.cpp
- src/core/formula.cpp
- src/core/fstring.cpp
- src/core/global_things.cpp
- src/core/include/associative_list.h
- src/core/include/baseobj.h
- src/core/include/batchlan.h
- src/core/include/calcnode.h


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/hyphy/-/compare/70449943334a316bb9d59bd41dcb9743f34bd7a0...702955742141f085191463dd350b1ab4ab6f867b

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View it on GitLab: https://salsa.debian.org/med-team/hyphy/-/compare/70449943334a316bb9d59bd41dcb9743f34bd7a0...702955742141f085191463dd350b1ab4ab6f867b
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