[med-svn] [Git][med-team/t-coffee][master] 4 commits: d/t/run-unit-test: don't meddle with user's home.

[Étienne Mollier (@emollier)]

Étienne Mollier pushed to branch master at Debian Med / t-coffee


Commits:
690dd016 by Etienne Mollier at 2022-11-01T11:06:36+01:00
d/t/run-unit-test: don't meddle with user's home.

- - - - -
b0b0d320 by Etienne Mollier at 2022-11-01T11:07:03+01:00
d/rules: build with -fsigned-char.

This fixes infinite loops on CPU architectures defaulting to the char
type being unsigned, such as on arm*, ppc* and s390*.

Closes: #1023230

- - - - -
6c443c11 by Etienne Mollier at 2022-11-01T11:11:22+01:00
d/control: add myself to uploaders.

- - - - -
0d96673d by Etienne Mollier at 2022-11-01T11:51:30+01:00
initialize changelog.

- - - - -


4 changed files:

- debian/changelog
- debian/control
- debian/rules
- debian/tests/run-unit-test


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,13 @@
+t-coffee (13.45.0.4846264+dfsg-2) UNRELEASED; urgency=medium
+
+  * d/t/run-unit-test: don't meddle with user's home.
+  * d/rules: build with -fsigned-char.
+    This fixes infinite loops on CPU architectures defaulting to the char
+    type being unsigned, such as on arm*, ppc* and s390*. (Closes: #1023230)
+  * d/control: add myself to uploaders.
+
+ -- Étienne Mollier <emollier at debian.org>  Tue, 01 Nov 2022 11:51:09 +0100
+
 t-coffee (13.45.0.4846264+dfsg-1) unstable; urgency=medium
 
   * New upstream version


=====================================
debian/control
=====================================
@@ -1,7 +1,8 @@
 Source: t-coffee
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
 Uploaders: Steffen Moeller <moeller at debian.org>,
-           Andreas Tille <tille at debian.org>
+           Andreas Tille <tille at debian.org>,
+           Étienne Mollier <emollier at debian.org>
 Section: science
 Priority: optional
 Build-Depends: debhelper-compat (= 13)


=====================================
debian/rules
=====================================
@@ -9,6 +9,8 @@ export DEB_BUILD_MAINT_OPTIONS = hardening=+all
 
 # Force -O0 to avoid crash in test suite (see debian/tests/run-unit-test)
 export DEB_CFLAGS_MAINT_APPEND+=-O0
+# Force signed char for architectures such as arm; no changes for the others.
+export DEB_CFLAGS_MAINT_APPEND+=-fsigned-char
 
 %:
 	dh $@ --sourcedirectory=t_coffee_source


=====================================
debian/tests/run-unit-test
=====================================
@@ -25,7 +25,7 @@ cd $AUTOPKGTEST_TMP
 find . -name "*.gz" -exec gunzip \{\} \;
 
 # Make sure HOME is set in environment (see bug #909530)
-export HOME=${HOME:-$PWD}
+export HOME="$PWD"
 
 t_coffee sample_rnaseq1.fasta
 t_coffee sample_rnaseq1.fasta -mode quickaln



View it on GitLab: https://salsa.debian.org/med-team/t-coffee/-/compare/ac16df38ee38debe05bcae67129c157e41d7dbeb...0d96673df42f6c1a66126e5eab1f7a60cca86458

-- 
View it on GitLab: https://salsa.debian.org/med-team/t-coffee/-/compare/ac16df38ee38debe05bcae67129c157e41d7dbeb...0d96673df42f6c1a66126e5eab1f7a60cca86458
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