[med-svn] [Git][med-team/snippy][master] 3 commits: depends libbio-perl-perl

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / snippy


Commits:
46435352 by Andreas Tille at 2022-11-01T16:12:49+01:00
depends libbio-perl-perl

- - - - -
5104b9ca by Andreas Tille at 2022-11-01T16:13:34+01:00
libbio-perl-perl

- - - - -
761ceaa1 by Andreas Tille at 2022-11-01T17:05:23+01:00
Build-time test

- - - - -


3 changed files:

- debian/control
- + debian/install
- debian/rules


Changes:

=====================================
debian/control
=====================================
@@ -3,7 +3,22 @@ Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.
 Uploaders: Andreas Tille <tille at debian.org>
 Section: science
 Priority: optional
-Build-Depends: debhelper-compat (= 13)
+Build-Depends: debhelper-compat (= 13),
+               any2fasta <!nocheck>,
+               bcftools <!nocheck>,
+               bedtools <!nocheck>,
+               bwa <!nocheck>,
+               freebayes <!nocheck>,
+               libbio-perl-perl <!nocheck>,
+               libvcflib-tools <!nocheck>,
+               minimap2 <!nocheck>,
+               parallel <!nocheck>,
+               samtools <!nocheck>,
+               samclip <!nocheck>,
+               seqtk <!nocheck>,
+               snp-sites <!nocheck>,
+               snpeff <!nocheck>,
+               vt <!nocheck>
 Standards-Version: 4.6.1
 Vcs-Browser: https://salsa.debian.org/med-team/snippy
 Vcs-Git: https://salsa.debian.org/med-team/snippy.git
@@ -19,6 +34,7 @@ Depends: ${shlibs:Depends},
          bedtools,
          bwa,
          freebayes (>= 1.3.6-2),
+         libbio-perl-perl,
          libvcflib-tools,
          minimap2,
          parallel,


=====================================
debian/install
=====================================
@@ -0,0 +1,2 @@
+bin	usr
+perl5	usr/share


=====================================
debian/rules
=====================================
@@ -1,31 +1,9 @@
 #!/usr/bin/make -f
 
 # DH_VERBOSE := 1
-export LC_ALL=C.UTF-8
-
-include /usr/share/dpkg/default.mk
-# this provides:
-# DEB_SOURCE: the source package name
-# DEB_VERSION: the full version of the package (epoch + upstream vers. + revision)
-# DEB_VERSION_EPOCH_UPSTREAM: the package's version without the Debian revision
-# DEB_VERSION_UPSTREAM_REVISION: the package's version without the Debian epoch
-# DEB_VERSION_UPSTREAM: the package's upstream version
-# DEB_DISTRIBUTION: the distribution(s) listed in the current entry of debian/changelog
-# SOURCE_DATE_EPOCH: the source release date as seconds since the epoch, as
-#                    specified by <https://reproducible-builds.org/specs/source-date-epoch/>
-
-# for hardening you might like to uncomment this:
-# export DEB_BUILD_MAINT_OPTIONS=hardening=+all
 
 %:
 	dh $@
 
-### When overriding auto_test make sure DEB_BUILD_OPTIONS will be respected
-#override_dh_auto_test:
-#ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
-#	do_stuff_for_testing
-#endif
-
-### If you **really** can not use uscan (even not with mode=git) use a debian/get-orig-script
-#get-orig-source:
-#	. debian/get-orig-source
+override_dh_auto_test:
+	cd test && $(MAKE)



View it on GitLab: https://salsa.debian.org/med-team/snippy/-/compare/0425c505258f14d3649d920795527dfa324efff8...761ceaa192da31531cae21de61061015c8840487

-- 
View it on GitLab: https://salsa.debian.org/med-team/snippy/-/compare/0425c505258f14d3649d920795527dfa324efff8...761ceaa192da31531cae21de61061015c8840487
You're receiving this email because of your account on salsa.debian.org.


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20221101/4d5af358/attachment-0001.htm>