[med-svn] [Git][med-team/beast2-mcmc][master] 32 commits: Cleaning the d/patches directory

[Pierre Gruet (@pgt)]

Pierre Gruet pushed to branch master at Debian Med / beast2-mcmc


Commits:
5250b8f1 by Pierre Gruet at 2022-10-25T16:14:48+02:00
Cleaning the d/patches directory

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30170768 by Pierre Gruet at 2022-10-25T17:04:35+02:00
Including the beastfx component in the source, making a MUT package

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787b65e9 by Pierre Gruet at 2022-10-25T17:04:49+02:00
New upstream version 2.7.1+dfsg2
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c1ae0ddd by Pierre Gruet at 2022-10-25T17:04:58+02:00
Update upstream source from tag 'upstream/2.7.1+dfsg2'

Update to upstream version '2.7.1+dfsg2'
with Debian dir 0e9793d3203b7c9299c7de19c03b82f228facfa7
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8c017a19 by Pierre Gruet at 2022-10-28T22:09:14+02:00
Refreshing dependencies

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601d7aac by Pierre Gruet at 2022-10-28T22:10:22+02:00
Stopping building the -doc package, its contents is not in the upstream tarball anymore

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d0121540 by Pierre Gruet at 2022-10-28T22:12:45+02:00
Invoking antlr4 during the build to generate source from grammar files using a Debian-packaged antlr4 version

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b751b683 by Pierre Gruet at 2022-10-28T22:13:14+02:00
Overriding the _auto_build and _auto_test rules to call the relevant ant tasks

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8ed6033d by Pierre Gruet at 2022-10-28T22:28:05+02:00
Refreshing classpath changes after adding the beastfx component

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981bc42e by Pierre Gruet at 2022-10-28T22:29:07+02:00
beast2app is got from the component we added

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1ab9f700 by Pierre Gruet at 2022-10-28T22:29:35+02:00
Skipping tests using the unpackaged javafx

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eb7c9d11 by Pierre Gruet at 2022-10-28T22:30:06+02:00
Removing the dependencies of the built jars to alleviate them

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e9379a22 by Pierre Gruet at 2022-10-28T22:30:37+02:00
Skipping the test attempting to access the user home directory

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32001391 by Pierre Gruet at 2022-10-28T22:31:16+02:00
Skipping the test needing GPU

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b86c449e by Pierre Gruet at 2022-10-28T22:31:32+02:00
Refreshing patches

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b0f7d891 by Pierre Gruet at 2022-10-28T22:34:06+02:00
Reordering patches

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686be68c by Pierre Gruet at 2022-10-28T23:31:55+02:00
texlive is not needed as a B-D anymore

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5bd1c1ff by Pierre Gruet at 2022-10-28T23:32:24+02:00
No more -doc package to suggest

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5aabbedf by Pierre Gruet at 2022-11-12T23:10:45+01:00
Setting the classpaths in the manifests and in the scripts shipped in /usr/bin

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3bc5fe67 by Pierre Gruet at 2022-11-12T23:12:11+01:00
Shipping a version.xml file for class loading, retreiving it from its install path

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1aa8538f by Pierre Gruet at 2022-11-12T23:13:26+01:00
Correcting patch grasping beast2app from component

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f0311ec7 by Pierre Gruet at 2022-11-12T23:53:35+01:00
Running run-unit-test with xvfb-run as a display would be needed

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b7da798b by Pierre Gruet at 2022-11-12T23:54:08+01:00
Running build tests as autopkgtests with junit5 instead of, formerly, junit4

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7a268236 by Pierre Gruet at 2022-11-12T23:56:30+01:00
Updating changelog

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e5a301c3 by Pierre Gruet at 2022-11-13T07:43:28+01:00
Excluding JS files with very-long-lines

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8b79bb1f by Pierre Gruet at 2022-11-13T07:45:57+01:00
New upstream version 2.7.2+dfsg
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d03cabc5 by Pierre Gruet at 2022-11-13T07:46:08+01:00
Update upstream source from tag 'upstream/2.7.2+dfsg'

Update to upstream version '2.7.2+dfsg'
with Debian dir b883dfc2bdc559f9f454f26b7da7f8a236476152
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6228b0c0 by Pierre Gruet at 2022-11-13T13:56:14+01:00
Refreshing d/copyright

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051d023c by Pierre Gruet at 2022-11-13T14:34:32+01:00
Adding missing patch header

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599c7255 by Pierre Gruet at 2022-11-13T14:38:36+01:00
Forwarding patch

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4c074bd4 by Pierre Gruet at 2022-11-13T14:44:20+01:00
Updating changelog

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6925d1a8 by Pierre Gruet at 2022-11-13T14:56:48+01:00
Upload to unstable

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20 changed files:

- + beastfx/DevGuideIntelliJ.md
- + beastfx/Dockerfile
- + beastfx/LICENSE.txt
- + beastfx/README.md
- + beastfx/build-testing.xml
- + beastfx/build.xml
- + beastfx/figures/BEAUti.png
- + beastfx/figures/IntelliJProject.png
- + beastfx/figures/PkgPref.png
- + beastfx/figures/b2-junit.png
- + beastfx/figures/b2-lib.png
- + beastfx/figures/b2Dep.png
- + beastfx/figures/b2Src.png
- + beastfx/figures/b2fx-lib.png
- + beastfx/figures/b2fxDep.png
- + beastfx/figures/b2fxSrc.png
- + beastfx/figures/zulu-17.png
- + beastfx/fxtemplates/ClockModels.xml
- + beastfx/fxtemplates/ParametricDistributions.xml
- + beastfx/fxtemplates/Standard.xml


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/beast2-mcmc/-/compare/4caa8e7c4d02a1be28f527efb875094ed76b89d7...6925d1a8583cd0fc37bf4e1be26689beaf102a43

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View it on GitLab: https://salsa.debian.org/med-team/beast2-mcmc/-/compare/4caa8e7c4d02a1be28f527efb875094ed76b89d7...6925d1a8583cd0fc37bf4e1be26689beaf102a43
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