[med-svn] [Git][med-team/roary][master] Fix autopkgtest

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / roary


Commits:
4c2b5616 by Andreas Tille at 2022-11-16T09:23:41+01:00
Fix autopkgtest

- - - - -


2 changed files:

- + debian/examples
- debian/tests/run-unit-test


Changes:

=====================================
debian/examples
=====================================
@@ -0,0 +1 @@
+t/data/genbank_gbff/*


=====================================
debian/tests/run-unit-test
=====================================
@@ -3,8 +3,7 @@
 # Author: Sascha Steinbiss <satta at debian.org>
 set -e
 
-ORIGDIR=$(pwd)
-DATADIR=$ORIGDIR/t/data/genbank_gbff
+pkg=roary
 
 export LC_ALL=C.UTF-8
 if [ "${AUTOPKGTEST_TMP}" = "" ] ; then
@@ -14,7 +13,8 @@ fi
 
 cd $AUTOPKGTEST_TMP
 
-cp $DATADIR/*.gff .
+cp -a /usr/share/doc/${pkg}/examples/* .
+cp -a /usr/share/doc/${pkg}/expected_files.out .
 
 # DEBUG: roary issues "Cannot find the mcxdeblast executable, please ensure its in your PATH" thus checking ...
 which mcxdeblast
@@ -23,4 +23,4 @@ roary -f out *.gff
 
 [ -d out ]
 
-find out | LC_ALL=C sort | diff - $ORIGDIR/debian/tests/expected_files.out
+find out | LC_ALL=C sort | diff - expected_files.out



View it on GitLab: https://salsa.debian.org/med-team/roary/-/commit/4c2b5616bab9d4f7732878ba3928a34b12c79ab4

-- 
View it on GitLab: https://salsa.debian.org/med-team/roary/-/commit/4c2b5616bab9d4f7732878ba3928a34b12c79ab4
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