[med-svn] [Git][med-team/augustus][master] skip filterBam auxprogs test on s390x

[Sascha Steinbiss (@satta)]

Sascha Steinbiss pushed to branch master at Debian Med / augustus


Commits:
b29db016 by Sascha Steinbiss at 2022-11-21T00:32:03+01:00
skip filterBam auxprogs test on s390x

- - - - -


3 changed files:

- debian/changelog
- + debian/patches/s390x-disable-filterbam-tests.patch
- debian/patches/series


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,9 @@
+augustus (3.5.0+dfsg-2) unstable; urgency=medium
+
+  * Skip filterBam auxprogs test on s390x.
+
+ -- Sascha Steinbiss <satta at debian.org>  Mon, 21 Nov 2022 00:11:53 +0100
+
 augustus (3.5.0+dfsg-1) unstable; urgency=medium
 
   * Team upload.


=====================================
debian/patches/s390x-disable-filterbam-tests.patch
=====================================
@@ -0,0 +1,34 @@
+Index: augustus/Makefile
+===================================================================
+--- augustus.orig/Makefile
++++ augustus/Makefile
+@@ -64,17 +64,21 @@ check-python3:
+ 
+ test: check-python3 all
+ ifeq ("$(shell uname -s -m)","Linux x86_64")
+-	$(eval TEST_COMPARE := )
+-	$(eval TEST_HTML := --html)
++	cd tests/short && ./execute_test.py --html examples
++	cd tests/short && ./execute_test.py --html bam2hints
++	cd tests/short && ./execute_test.py --html bam2wig
++	cd tests/short && ./execute_test.py --html filterbam
++else ifeq ("$(shell uname -s -m)", "Linux s390x")
++	cd tests/short && ./execute_test.py examples
++	cd tests/short && ./execute_test.py --html bam2hints
++	cd tests/short && ./execute_test.py --html bam2wig
+ else
+ 	$(info If you run make test on a non-AMD64 architecture or a non-Linux system (like macOS), most tests will run without the --compare option!)
+-	$(eval TEST_COMPARE := )
+-	$(eval TEST_HTML := )
++	cd tests/short && ./execute_test.py examples
++	cd tests/short && ./execute_test.py --html bam2hints
++	cd tests/short && ./execute_test.py --html bam2wig
++	cd tests/short && ./execute_test.py --html filterbam
+ endif
+-	cd tests/short && ./execute_test.py $(TEST_COMPARE) $(TEST_HTML) examples
+-	cd tests/short && ./execute_test.py  --html bam2hints
+-	cd tests/short && ./execute_test.py  --html bam2wig
+-	cd tests/short && ./execute_test.py  --html filterbam
+ 
+ unit_test:
+ 	cd src && ${MAKE} unittest


=====================================
debian/patches/series
=====================================
@@ -3,3 +3,4 @@ set_installdir
 interpreter_paths.patch
 switch_cgp_testing_off.patch
 disable-compare.patch
+s390x-disable-filterbam-tests.patch



View it on GitLab: https://salsa.debian.org/med-team/augustus/-/commit/b29db016a53cace78ec452766c240dedb630c482

-- 
View it on GitLab: https://salsa.debian.org/med-team/augustus/-/commit/b29db016a53cace78ec452766c240dedb630c482
You're receiving this email because of your account on salsa.debian.org.


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20221120/c754d207/attachment-0001.htm>