[med-svn] [Git][med-team/python-pyani][master] 5 commits: Fix watch file

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / python-pyani


Commits:
06460bb3 by Andreas Tille at 2022-11-23T20:36:22+01:00
Fix watch file

- - - - -
8ef3c6cf by Andreas Tille at 2022-11-23T20:37:02+01:00
routine-update: New upstream version

- - - - -
953b66f8 by Andreas Tille at 2022-11-23T20:37:04+01:00
New upstream version 0.2.12
- - - - -
0018d143 by Andreas Tille at 2022-11-23T20:44:07+01:00
Update upstream source from tag 'upstream/0.2.12'

Update to upstream version '0.2.12'
with Debian dir 164e0b74c35f601796e33056a2d50e2ffc29f41b
- - - - -
0427e32c by Andreas Tille at 2022-11-23T20:44:07+01:00
routine-update: Standards-Version: 4.6.1

- - - - -


6 changed files:

- CHANGES.md
- bin/average_nucleotide_identity.py
- debian/changelog
- debian/control
- debian/watch
- pyani/__init__.py


Changes:

=====================================
CHANGES.md
=====================================
@@ -1,12 +1,20 @@
 # CHANGES.md
 
+## v0.2.12
+
+- fix Issue #177: input filenames that contain an open or a closed parenthesis produce the message: 'WARNING: At least one BLAST run failed. ANIb may fail.'
+
+## 0.2.11
+
+- fix Issue #298: `pd.io.common.EmptyDataError` has been deprecated, so empty datafiles are not correctly flagged
+
 ## v0.2.10
 
 - fix Issue #178: input filenames that could be interpreted as floats may break `labels.txt`/`classes.txt` integration, and graphical output
 
 ## v0.2.9
 
-- fix 1ssue #132: TETRA would fail if not all 4-mers present in all input sequences
+- fix Issue #132: TETRA would fail if not all 4-mers present in all input sequences
 
 ## v0.2.8
 


=====================================
bin/average_nucleotide_identity.py
=====================================
@@ -904,6 +904,11 @@ if __name__ == "__main__":
             logger.error("This will cause issues with MUMmer and BLAST")
             logger.error("(exiting)")
             sys.exit(1)
+        if any(['(' in fname, ')' in fname]):
+            logger.error("File or directory '%s' contains parentheses", fname)
+            logger.error("This will cause issues with MUMmer and BLAST")
+            logger.error("(exiting)")
+            sys.exit(1)
 
     if args.labels and not os.path.isfile(args.labels):
         logger.error("Missing labels file: %s", args.labels)


=====================================
debian/changelog
=====================================
@@ -1,3 +1,11 @@
+python-pyani (0.2.12-1) UNRELEASED; urgency=medium
+
+  * Fix watch file
+  * New upstream version
+  * Standards-Version: 4.6.1 (routine-update)
+
+ -- Andreas Tille <tille at debian.org>  Wed, 23 Nov 2022 20:37:02 +0100
+
 python-pyani (0.2.11-1) unstable; urgency=medium
 
   * Team Upload.


=====================================
debian/control
=====================================
@@ -15,7 +15,7 @@ Build-Depends: debhelper-compat (= 13),
                mummer <!nocheck>,
                ncbi-blast+ <!nocheck>,
                python3-nose <!nocheck>
-Standards-Version: 4.5.1
+Standards-Version: 4.6.1
 Vcs-Browser: https://salsa.debian.org/med-team/python-pyani
 Vcs-Git: https://salsa.debian.org/med-team/python-pyani.git
 Homepage: https://github.com/widdowquinn/pyani


=====================================
debian/watch
=====================================
@@ -1,3 +1,3 @@
 version=4
 
-https://github.com/widdowquinn/pyani/releases .*/archive/.*/v?@ANY_VERSION@@ARCHIVE_EXT@
+https://github.com/widdowquinn/pyani/tags .*/v?@ANY_VERSION@@ARCHIVE_EXT@


=====================================
pyani/__init__.py
=====================================
@@ -1,3 +1,3 @@
 # python package version
 # should match r"^__version__ = '(?P<version>[^']+)'$" for setup.py
-__version__ = "0.2.11"
+__version__ = "0.2.12"



View it on GitLab: https://salsa.debian.org/med-team/python-pyani/-/compare/4d6e83f8f8ce10d7f51fff8c3f789382aad32b07...0427e32cda3645043c683f39bfbe08ce0b5a7b61

-- 
View it on GitLab: https://salsa.debian.org/med-team/python-pyani/-/compare/4d6e83f8f8ce10d7f51fff8c3f789382aad32b07...0427e32cda3645043c683f39bfbe08ce0b5a7b61
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