[med-svn] [Git][med-team/python-pyani][upstream] New upstream version 0.2.12

[Andreas Tille (@tille)]

Andreas Tille pushed to branch upstream at Debian Med / python-pyani


Commits:
953b66f8 by Andreas Tille at 2022-11-23T20:37:04+01:00
New upstream version 0.2.12
- - - - -


3 changed files:

- CHANGES.md
- bin/average_nucleotide_identity.py
- pyani/__init__.py


Changes:

=====================================
CHANGES.md
=====================================
@@ -1,12 +1,20 @@
 # CHANGES.md
 
+## v0.2.12
+
+- fix Issue #177: input filenames that contain an open or a closed parenthesis produce the message: 'WARNING: At least one BLAST run failed. ANIb may fail.'
+
+## 0.2.11
+
+- fix Issue #298: `pd.io.common.EmptyDataError` has been deprecated, so empty datafiles are not correctly flagged
+
 ## v0.2.10
 
 - fix Issue #178: input filenames that could be interpreted as floats may break `labels.txt`/`classes.txt` integration, and graphical output
 
 ## v0.2.9
 
-- fix 1ssue #132: TETRA would fail if not all 4-mers present in all input sequences
+- fix Issue #132: TETRA would fail if not all 4-mers present in all input sequences
 
 ## v0.2.8
 


=====================================
bin/average_nucleotide_identity.py
=====================================
@@ -904,6 +904,11 @@ if __name__ == "__main__":
             logger.error("This will cause issues with MUMmer and BLAST")
             logger.error("(exiting)")
             sys.exit(1)
+        if any(['(' in fname, ')' in fname]):
+            logger.error("File or directory '%s' contains parentheses", fname)
+            logger.error("This will cause issues with MUMmer and BLAST")
+            logger.error("(exiting)")
+            sys.exit(1)
 
     if args.labels and not os.path.isfile(args.labels):
         logger.error("Missing labels file: %s", args.labels)


=====================================
pyani/__init__.py
=====================================
@@ -1,3 +1,3 @@
 # python package version
 # should match r"^__version__ = '(?P<version>[^']+)'$" for setup.py
-__version__ = "0.2.11"
+__version__ = "0.2.12"



View it on GitLab: https://salsa.debian.org/med-team/python-pyani/-/commit/953b66f8dccf1d21230008f62bbe51e6fc7a1ef1

-- 
View it on GitLab: https://salsa.debian.org/med-team/python-pyani/-/commit/953b66f8dccf1d21230008f62bbe51e6fc7a1ef1
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