[med-svn] [Git][med-team/python-biopython][master] 16 commits: New upstream version 1.79+dfsg

[Étienne Mollier (@emollier)]

Étienne Mollier pushed to branch master at Debian Med / python-biopython


Commits:
c2563676 by Étienne Mollier at 2021-08-23T10:01:14+02:00
New upstream version 1.79+dfsg
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bbb3fd70 by Étienne Mollier at 2022-11-23T21:00:33+01:00
routine-update: New upstream version

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24e0d332 by Étienne Mollier at 2022-11-23T21:00:37+01:00
New upstream version 1.80+dfsg
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1bc87dd3 by Étienne Mollier at 2022-11-23T21:01:34+01:00
Update upstream source from tag 'upstream/1.80+dfsg'

Update to upstream version '1.80+dfsg'
with Debian dir 5af56f7a716b33ab6f232534e32d1da0e7ef0505
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56375e64 by Étienne Mollier at 2022-11-23T21:01:35+01:00
routine-update: Standards-Version: 4.6.1

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cf36af87 by Étienne Mollier at 2022-11-23T21:02:01+01:00
Set upstream metadata fields: Security-Contact.

Changes-By: lintian-brush

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44085826 by Étienne Mollier at 2022-11-23T21:02:57+01:00
privacy_breach_ie9.patch: refresh.

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a5f156d7 by Étienne Mollier at 2022-11-23T21:05:08+01:00
adjust-test_GraphicsBitmaps.patch: delete; applied upstream.

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a0457836 by Étienne Mollier at 2022-11-23T21:06:11+01:00
spelling.patch: delete; applied upstream.

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40f5ca5b by Étienne Mollier at 2022-11-23T21:07:59+01:00
dssp-v4-support.patch: delete; applied upstream.

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b5d86e51 by Étienne Mollier at 2022-11-23T21:09:51+01:00
update changelog.

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afcc633d by Étienne Mollier at 2022-11-23T22:45:04+01:00
d/control: remove test dependency on problematic packages.

muscle 5 wrapping is unsupported upstream, and t_coffee suffers from
segmentation faults documented in #1022570

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6a863ebd by Étienne Mollier at 2022-11-24T00:05:55+01:00
croak-on-muscle5.patch: add; raise RuntimeError with muscle 5.

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37f2ddef by Étienne Mollier at 2022-11-24T00:07:17+01:00
d/NEWS: describe incompatibility with muscle 5.

Also describe possible workarounds.

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8fd36054 by Étienne Mollier at 2022-11-24T00:12:47+01:00
d/not-installed: add tree1 and other_trees.

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be70b4e7 by Étienne Mollier at 2022-11-24T00:15:15+01:00
update changelog

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17 changed files:

- .appveyor.yml
- .circleci/config.yml
- + .circleci/requirements-sphinx.txt
- .flake8
- .github/CODEOWNERS
- + .github/CODE_OF_CONDUCT.md
- .github/PULL_REQUEST_TEMPLATE.md
- + .github/SECURITY.md
- .github/deploy_docs.sh
- + .github/workflows/ci.yml
- .gitignore
- .pre-commit-config.yaml
- − .travis-tox.ini
- − .travis.yml
- Bio/Affy/CelFile.py
- Bio/Align/AlignInfo.py
- Bio/Align/Applications/_Mafft.py


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/python-biopython/-/compare/7c3f39038e1b867aa4f3a185d62d49e8c3676fee...be70b4e77989dc94e56c25a2b92aed72f66cb6d2

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View it on GitLab: https://salsa.debian.org/med-team/python-biopython/-/compare/7c3f39038e1b867aa4f3a185d62d49e8c3676fee...be70b4e77989dc94e56c25a2b92aed72f66cb6d2
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