[med-svn] [Git][med-team/dssp][master] 3 commits: New upstream version 4.2.0

[Maarten L. Hekkelman (@mhekkel-guest)]

Maarten L. Hekkelman pushed to branch master at Debian Med / dssp


Commits:
63d815c3 by Maarten L. Hekkelman at 2022-11-24T11:37:30+01:00
New upstream version 4.2.0
- - - - -
638f3dc5 by Maarten L. Hekkelman at 2022-11-24T11:37:33+01:00
Update upstream source from tag 'upstream/4.2.0'

Update to upstream version '4.2.0'
with Debian dir dccb3233e5ee4eab9581ef56eedf7a49bf5c9d22
- - - - -
00c61d57 by Maarten L. Hekkelman at 2022-11-24T11:50:51+01:00
depends

- - - - -


7 changed files:

- debian/changelog
- debian/control
- debian/libdssp-dev.install
- − debian/libdssp4.install
- − debian/patches/series
- − debian/patches/unit-test-fix.patch
- debian/tests/control


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,9 @@
+dssp (4.2.0-1) unstable; urgency=medium
+
+  * New upstream release.
+
+ -- Maarten L. Hekkelman <maarten at hekkelman.com>  Thu, 24 Nov 2022 11:39:54 +0100
+
 dssp (4.0.4-1) unstable; urgency=medium
 
   * New upstream release, Closes: #1005450 


=====================================
debian/control
=====================================
@@ -6,7 +6,10 @@ Priority: optional
 Build-Depends: debhelper-compat (= 13),
  cmake,
  mrc,
- libcifpp-dev,
+ libcifpp-dev (>= 5.0.5-2~),
+ libboost-dev,
+ libboost-regex-dev,
+ zlib1g-dev,
  libmcfp-dev
 Standards-Version: 4.5.0
 Rules-Requires-Root: no
@@ -18,8 +21,7 @@ Package: dssp
 Section: libdevel
 Architecture: any
 Depends: ${misc:Depends},
-         ${shlibs:Depends},
-		 libdssp4 (= ${binary:Version})
+         ${shlibs:Depends}
 Description: protein secondary structure assignment based on 3D structure
  DSSP is an application you use to assign the secondary structure of a protein
  based on its solved three dimensional (3D) structure.
@@ -28,21 +30,11 @@ Description: protein secondary structure assignment based on 3D structure
  by default but can still produce the older dssp format. New is also the
  support of PP helices.
 
-Package: libdssp4
-Architecture: any
-Depends: ${misc:Depends},
-         libcifpp5
-Multi-Arch: same
-Description: The DSSP functionality, protein secondary structure assignment,
- is now also available as a shared library.
- .
- This package contains the library file only.
-
 Package: libdssp-dev
 Architecture: any
 Depends: ${misc:Depends},
          ${shlibs:Depends},
-		 libdssp4 (= ${binary:Version})
+         libcifpp-dev
 Multi-Arch: same
 Description: The DSSP functionality, protein secondary structure assignment,
  is now also available as a shared library.


=====================================
debian/libdssp-dev.install
=====================================
@@ -1,4 +1,4 @@
 usr/lib/*/cmake/dssp/*.cmake
 usr/lib/*/pkgconfig/*.pc
 usr/include
-usr/lib/*/*.so.*
+usr/lib/*/*.a


=====================================
debian/libdssp4.install deleted
=====================================
@@ -1 +0,0 @@
-usr/lib/*/*.so


=====================================
debian/patches/series deleted
=====================================
@@ -1 +0,0 @@
-unit-test-fix.patch


=====================================
debian/patches/unit-test-fix.patch deleted
=====================================
@@ -1,22 +0,0 @@
-Description: Fix the unit-test by adding a parameter
-Author: Maarten L. Hekkelman <maarten at hekkelman.com>
-Forwarded: yes
-
---- a/test/unit-test-dssp.cpp
-+++ b/test/unit-test-dssp.cpp
-@@ -134,7 +134,7 @@
- 
- 	std::stringstream test;
- 
--	annotateDSSP(f.front(), dssp, true, test);
-+	annotateDSSP(f.front(), dssp, true, false, test);
- 
- 	cif::file rf(gTestDir / "1cbs-dssp.cif");
- 
-@@ -220,4 +220,4 @@
- 		BOOST_CHECK_EQUAL(ri.seq_id(), seqID);
- 		BOOST_CHECK_EQUAL((char)ri.type(), secstr.front());
- 	}
--}
-\ No newline at end of file
-+}


=====================================
debian/tests/control
=====================================
@@ -1,3 +1,3 @@
 Tests: run-unit-test
-Depends: @, libcifpp-dev (>= 1.0.0-2)
+Depends: @
 Restrictions: allow-stderr



View it on GitLab: https://salsa.debian.org/med-team/dssp/-/compare/a1b5c86d3c1c284dc4eb0af95f162b8bf068f765...00c61d577a9227ebd94d8465370d5e54d8654877

-- 
View it on GitLab: https://salsa.debian.org/med-team/dssp/-/compare/a1b5c86d3c1c284dc4eb0af95f162b8bf068f765...00c61d577a9227ebd94d8465370d5e54d8654877
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