[med-svn] [Git][med-team/vcfanno][master] 6 commits: Fix watch file

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / vcfanno


Commits:
2cb4d96c by Andreas Tille at 2022-11-25T21:15:36+01:00
Fix watch file

- - - - -
cd8fe8b2 by Andreas Tille at 2022-11-25T21:16:00+01:00
New upstream version 0.3.4+ds
- - - - -
4c481e8d by Andreas Tille at 2022-11-25T21:16:00+01:00
routine-update: New upstream version

- - - - -
5e3674c8 by Andreas Tille at 2022-11-25T21:16:01+01:00
Update upstream source from tag 'upstream/0.3.4+ds'

Update to upstream version '0.3.4+ds'
with Debian dir 206ddf3a2e99bb79e20593f1a5c7d6dc9ac88b9f
- - - - -
fc74be18 by Andreas Tille at 2022-11-25T21:16:48+01:00
Update patch

- - - - -
fac81709 by Andreas Tille at 2022-11-25T21:19:01+01:00
routine-update: Ready to upload to unstable

- - - - -


7 changed files:

- + .travis.yml
- README.md
- debian/changelog
- debian/patches/use-archive-xopen.patch
- debian/watch
- go.mod
- vcfanno.go


Changes:

=====================================
.travis.yml
=====================================
@@ -0,0 +1,18 @@
+language: go
+
+os:
+  - linux
+  - osx
+
+go:
+  - 1.16.x
+  - 1.17.x
+
+before_install:
+  - make
+  - go get github.com/axw/gocov/gocov
+  - go get github.com/mattn/goveralls
+  - go get golang.org/x/tools/cmd/cover
+script:
+    - ./tests/functional-test.sh
+


=====================================
README.md
=====================================
@@ -7,7 +7,7 @@ build:
 -->
 
 
-[![Build Status](https://travis-ci.com/brentp/vcfanno.svg)](https://travis-ci.com/brentp/vcfanno)
+[![Build Status](https://app.travis-ci.com/brentp/vcfanno.svg?branch=master)](https://app.travis-ci.com/brentp/vcfanno)
 [![Docs](https://img.shields.io/badge/docs-latest-blue.svg)](http://brentp.github.io/vcfanno/)
 
 If you use vcfanno, please cite [the paper](https://genomebiology.biomedcentral.com/articles/10.1186/s13059-016-0973-5)


=====================================
debian/changelog
=====================================
@@ -1,3 +1,10 @@
+vcfanno (0.3.4+ds-1) unstable; urgency=medium
+
+  * Fix watch file
+  * New upstream version
+
+ -- Andreas Tille <tille at debian.org>  Fri, 25 Nov 2022 21:17:16 +0100
+
 vcfanno (0.3.3+ds-2) unstable; urgency=medium
 
   * Team upload.


=====================================
debian/patches/use-archive-xopen.patch
=====================================
@@ -3,7 +3,7 @@ Description: Instead of github.com/brentp/xopen, its fork github.com/shenwei356/
 Last Changed: Mon July 13, 2020
 --- a/bench_test.go
 +++ b/bench_test.go
-@@ -13,7 +13,7 @@
+@@ -13,7 +13,7 @@ import (
  	"github.com/brentp/irelate/parsers"
  	"github.com/brentp/vcfanno/api"
  	"github.com/brentp/vcfanno/shared"
@@ -14,7 +14,7 @@ Last Changed: Mon July 13, 2020
  func benchmarkAnno(b *testing.B) {
 --- a/shared/shared.go
 +++ b/shared/shared.go
-@@ -7,7 +7,7 @@
+@@ -7,7 +7,7 @@ import (
  	"strings"
  
  	. "github.com/brentp/vcfanno/api"
@@ -25,7 +25,7 @@ Last Changed: Mon July 13, 2020
  type Config struct {
 --- a/vcfanno.go
 +++ b/vcfanno.go
-@@ -23,7 +23,7 @@
+@@ -23,7 +23,7 @@ import (
  	. "github.com/brentp/vcfanno/api"
  	. "github.com/brentp/vcfanno/shared"
  	"github.com/brentp/vcfgo"
@@ -33,4 +33,4 @@ Last Changed: Mon July 13, 2020
 +	"github.com/shenwei356/xopen"
  )
  
- var VERSION = "0.3.3"
+ var VERSION = "0.3.4"


=====================================
debian/watch
=====================================
@@ -1,4 +1,4 @@
 version=4
 
-opts="dversionmangle=auto,repacksuffix=+ds" \
-https://github.com/brentp/vcfanno/releases .*/v?@ANY_VERSION@@ARCHIVE_EXT@
+opts="dversionmangle=auto,repacksuffix=+ds,filenamemangle=s%(?:.*?)?v?(\d[\d.]*)\.tar\.gz%@PACKAGE at -$1.tar.gz%" \
+  https://github.com/brentp/vcfanno/tags .*/v?@ANY_VERSION@@ARCHIVE_EXT@


=====================================
go.mod
=====================================
@@ -8,11 +8,10 @@ require (
 	github.com/brentp/bix v0.0.0-20190718140914-00aa7a7f205d
 	github.com/brentp/goluaez v0.0.0-20160116211227-dd35d08e32e7
 	github.com/brentp/irelate v0.0.1
-	github.com/brentp/vcfgo v0.0.0-20190824021612-654ed2e5945d
+	github.com/brentp/vcfgo v0.0.0-20220919165057-adf3b5d20c55
 	github.com/brentp/xopen v0.0.0-20181116180855-111b45cadc7d
 	github.com/pkg/errors v0.9.1 // indirect
 	github.com/yuin/gluare v0.0.0-20170607022532-d7c94f1a80ed // indirect
 	github.com/yuin/gopher-lua v0.0.0-20210529063254-f4c35e4016d9 // indirect
-	golang.org/x/tools v0.1.5 // indirect
 	gopkg.in/check.v1 v1.0.0-20201130134442-10cb98267c6c
 )


=====================================
vcfanno.go
=====================================
@@ -26,7 +26,7 @@ import (
 	"github.com/brentp/xopen"
 )
 
-var VERSION = "0.3.3"
+var VERSION = "0.3.4"
 
 func envGet(name string, vdefault int) int {
 	sval := os.Getenv(name)



View it on GitLab: https://salsa.debian.org/med-team/vcfanno/-/compare/2e30f0f7894ff904434d5fa76b6491cfdbfc3650...fac8170997dd2314b1e90536045db10c9c118f32

-- 
View it on GitLab: https://salsa.debian.org/med-team/vcfanno/-/compare/2e30f0f7894ff904434d5fa76b6491cfdbfc3650...fac8170997dd2314b1e90536045db10c9c118f32
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