[med-svn] [Git][med-team/kaptive][master] 8 commits: Fix watch file
Andreas Tille (@tille)
gitlab at salsa.debian.org
Sun Nov 27 20:26:30 GMT 2022
Andreas Tille pushed to branch master at Debian Med / kaptive
Commits:
4f7f9474 by Andreas Tille at 2022-11-27T07:03:09+01:00
Fix watch file
- - - - -
a8f12255 by Andreas Tille at 2022-11-27T07:03:21+01:00
New upstream version 2.0.4
- - - - -
f7604a82 by Andreas Tille at 2022-11-27T07:03:21+01:00
routine-update: New upstream version
- - - - -
b862cd1d by Andreas Tille at 2022-11-27T07:04:32+01:00
Update upstream source from tag 'upstream/2.0.4'
Update to upstream version '2.0.4'
with Debian dir 4d766789cf745b114e11a5a09fb6a9559b7df199
- - - - -
b5e37cdf by Andreas Tille at 2022-11-27T20:47:41+01:00
Build-Depends: s/python3-all/python3/ since kaptive.py is just a user application
- - - - -
39cc6bd8 by Andreas Tille at 2022-11-27T21:04:46+01:00
Add usr/lib to kaptive.install
- - - - -
28bdb465 by Andreas Tille at 2022-11-27T21:12:39+01:00
Fix lintian-overrides
- - - - -
902b93f7 by Andreas Tille at 2022-11-27T21:25:45+01:00
Upload to unstable
- - - - -
6 changed files:
- debian/changelog
- debian/control
- debian/kaptive.install
- debian/lintian-overrides
- debian/watch
- reference_database/Acinetobacter_baumannii_k_locus_primary_reference.gbk
Changes:
=====================================
debian/changelog
=====================================
@@ -1,3 +1,14 @@
+kaptive (2.0.4-1) unstable; urgency=medium
+
+ * Fix watch file
+ * New upstream version
+ * Build-Depends: s/python3-all/python3/ since kaptive.py is just a
+ user application
+ * Add usr/lib to kaptive.install
+ * Fix lintian-overrides
+
+ -- Andreas Tille <tille at debian.org> Sun, 27 Nov 2022 21:22:44 +0100
+
kaptive (2.0.3-2) unstable; urgency=medium
* Team Upload.
=====================================
debian/control
=====================================
@@ -5,7 +5,7 @@ Section: science
Priority: optional
Build-Depends: debhelper-compat (= 13),
dh-python,
- python3-all,
+ python3,
python3-setuptools,
python3-biopython <!nocheck>,
debhelper
=====================================
debian/kaptive.install
=====================================
@@ -1 +1,2 @@
usr/bin
+usr/lib
=====================================
debian/lintian-overrides
=====================================
@@ -1,2 +1,2 @@
# see https://lists.debian.org/debian-med/2018/06/msg00043.html
-kaptive: script-with-language-extension usr/bin/*.*
+kaptive: script-with-language-extension [usr/bin/kaptive.py]
=====================================
debian/watch
=====================================
@@ -1,3 +1,4 @@
version=4
-https://github.com/katholt/Kaptive/releases .*/v?@ANY_VERSION@@ARCHIVE_EXT@
+opts="filenamemangle=s%(?:.*?)?v?(\d[\d.]*)\.tar\.gz%@PACKAGE at -$1.tar.gz%" \
+ https://github.com/katholt/Kaptive/tags .*/v?@ANY_VERSION@@ARCHIVE_EXT@
=====================================
reference_database/Acinetobacter_baumannii_k_locus_primary_reference.gbk
=====================================
@@ -39844,13 +39844,13 @@ FEATURES Location/Qualifiers
KPLKLEFKGANQFTLTYKDQVVFNGQLNKKNILNTNRGLWQVQLNAQGNLKEQSYTLT
KLALPTAVKNFNDIYSVAEKGKVTGVIGLNYLGQDPEHITQVLNNVLTVYHQQNIERK
SLESKQTLAFLEKQLPELRKQLEDSEIKFNQFREKYKTVDVNAESELLLKQNIDLEKL
- KIELQQKQAELSAKYTNDHPLILQIDAQIAEINKKIADLNNRLTQLPETQRΩLYLQLY
- RDVKVNTELYTSLLNSYQQLKIANAGEIGNVRIIDTAVEPVKPVKPKKLIILILSIFI
- GGFIGVLIALLRDMMRSGVNDSAQIENELDLPVYATVPRSPIQETRMSILKKKKSIPI
- LAVKNSDDIAIESLRSIRTTIHFALANAKNNIIMIAGPAPEVGKSFISTNLATIFAQG
- NKRVLLIDADMRRGYMHKYFDIDVKPGLSELLSGQADLSQVLHKTQVTNLDVITRGKS
- PTNPSEMLSSMQFKDLLEKFQTQYDHIIIDTPPVLAVTDGIIISQYTGVNLIVARYAK
- SHMKELELTVNRFEQAGVKVNGFILNDIQRSSGGGYGYNYAYAYKAQKED"
+ KIELQQKQAELSAKYTNDHPLILQIDAQIAEINKKIADLNNRLTQLPETQRLYLQLYR
+ DVKVNTELYTSLLNSYQQLKIANAGEIGNVRIIDTAVEPVKPVKPKKLIILILSIFIG
+ GFIGVLIALLRDMMRSGVNDSAQIENELDLPVYATVPRSPIQETRMSILKKKKSIPIL
+ AVKNSDDIAIESLRSIRTTIHFALANAKNNIIMIAGPAPEVGKSFISTNLATIFAQGN
+ KRVLLIDADMRRGYMHKYFDIDVKPGLSELLSGQADLSQVLHKTQVTNLDVITRGKSP
+ TNPSEMLSSMQFKDLLEKFQTQYDHIIIDTPPVLAVTDGIIISQYTGVNLIVARYAKS
+ HMKELELTVNRFEQAGVKVNGFILNDIQRSSGGGYGYNYAYAYKAQKED"
CDS complement(2218..2646)
/gene="wzb"
/codon_start=1
@@ -120811,9 +120811,9 @@ REFERENCE 1 (bases 1 to 22502)
JOURNAL PLoS One 8 (4), e62160 (2013)
PUBMED 23614028
REFERENCE 1 (bases 1 to 22502)
- AUTHORS Lees‐Miller, R.G., Iwashkiw, J.A., Scott, N.E., Seper, A., Vinogradov,
+ AUTHORS Lees-Miller, R.G., Iwashkiw, J.A., Scott, N.E., Seper, A., Vinogradov,
E., Schild, S. and Feldman, M.F.,
- TITLE A common pathway for O‐linked protein‐glycosylation and synthesis of
+ TITLE A common pathway for O-linked protein-glycosylation and synthesis of
capsule in Acinetobacter baumannii
JOURNAL Mol Microbiol 89 (5), 816-830 (2013)
PUBMED 23782391
@@ -152506,7 +152506,7 @@ REFERENCE 3 (bases 1 to 25088)
Liu,B., Miroshnikov,K.A., Volozhantsev,N.V., Knirel,Y.A.
TITLE Revised structure of the capsular polysaccharide of Acinetobacter
baumannii LUH5533 (serogroup O1) containing di-N-acetyllegionaminic acid
- JOURNAL Russian Chemical Bulletin. 64 (5): 1196–1199 (2016)
+ JOURNAL Russian Chemical Bulletin. 64 (5): 1196-1199 (2016)
COMMENT Sequence obtained for annotation from NCBI accession number
CP002522.2. Sequence authors listed in entry.
FEATURES Location/Qualifiers
View it on GitLab: https://salsa.debian.org/med-team/kaptive/-/compare/4291e514931e7f17251ff9558c9d1886f50ed8e4...902b93f73cb9d369b4e320016486d4874b94b389
--
View it on GitLab: https://salsa.debian.org/med-team/kaptive/-/compare/4291e514931e7f17251ff9558c9d1886f50ed8e4...902b93f73cb9d369b4e320016486d4874b94b389
You're receiving this email because of your account on salsa.debian.org.
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20221127/2ccb8f61/attachment-0001.htm>
More information about the debian-med-commit
mailing list