[med-svn] [Git][med-team/python-pysam][master] 8 commits: routine-update: New upstream version

[Étienne Mollier (@emollier)]

Étienne Mollier pushed to branch master at Debian Med / python-pysam


Commits:
ed14263e by Étienne Mollier at 2022-11-19T11:29:50+01:00
routine-update: New upstream version

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9ae61ccd by Étienne Mollier at 2022-11-19T11:30:14+01:00
New upstream version 0.20.0+ds
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23b1480e by Étienne Mollier at 2022-11-19T11:30:20+01:00
Update upstream source from tag 'upstream/0.20.0+ds'

Update to upstream version '0.20.0+ds'
with Debian dir 2c2bff2e77fc8502275a657cbd46232dcf7c1767
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d54d7fbd by Étienne Mollier at 2022-11-19T11:30:26+01:00
Update lintian override info format in d/python-pysam.lintian-overrides on line 4.

Changes-By: lintian-brush
Fixes: lintian: mismatched-override
See-also: https://lintian.debian.org/tags/mismatched-override.html

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a2ae98dc by Étienne Mollier at 2022-11-19T11:33:37+01:00
skip_test_remote.patch: refresh.

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40553a2a by Étienne Mollier at 2022-11-19T11:34:57+01:00
test-truncated-bam.patch: delete; applied upstream.

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1b5a9370 by Étienne Mollier at 2022-11-29T21:39:28+01:00
d/control: make build only depend on python3-dev.

Currently python3.11 support is missing, this is a temporary measure
to make sure the package can be shipped for bookworm.

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750dfece by Étienne Mollier at 2022-11-29T21:44:09+01:00
ready to upload to unstable.

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30 changed files:

- NEWS
- README.rst
- bcftools/bam2bcf.c
- bcftools/bam2bcf.c.pysam.c
- bcftools/bam2bcf.h
- bcftools/consensus.c
- bcftools/consensus.c.pysam.c
- bcftools/convert.c
- bcftools/convert.c.pysam.c
- bcftools/filter.c
- bcftools/filter.c.pysam.c
- bcftools/mpileup.c
- bcftools/mpileup.c.pysam.c
- bcftools/prob1.c
- bcftools/prob1.c.pysam.c
- bcftools/vcfannotate.c
- bcftools/vcfannotate.c.pysam.c
- bcftools/vcfbuf.c
- bcftools/vcfbuf.c.pysam.c
- bcftools/vcfbuf.h
- bcftools/vcfcall.c
- bcftools/vcfcall.c.pysam.c
- bcftools/vcfconvert.c
- bcftools/vcfconvert.c.pysam.c
- bcftools/vcfindex.c
- bcftools/vcfindex.c.pysam.c
- bcftools/vcfisec.c
- bcftools/vcfisec.c.pysam.c
- bcftools/vcfmerge.c
- bcftools/vcfmerge.c.pysam.c


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/python-pysam/-/compare/27dffc0abf8f3e34bd463d6ddc75644717168f0e...750dfecef2ba233ab3557c16083de05885fbb86f

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