[med-svn] [Git][med-team/python-cogent][master] 4 commits: routine-update: New upstream version

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / python-cogent


Commits:
4e54b27e by Andreas Tille at 2022-11-30T19:25:40+01:00
routine-update: New upstream version

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e8c5d143 by Andreas Tille at 2022-11-30T19:25:41+01:00
New upstream version 2022.10.31a1+dfsg
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26f4f192 by Andreas Tille at 2022-11-30T19:25:45+01:00
Update upstream source from tag 'upstream/2022.10.31a1+dfsg'

Update to upstream version '2022.10.31a1+dfsg'
with Debian dir 85b667a6955a1dac5b03ff8b8d31edb093ca1997
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54b91582 by Andreas Tille at 2022-11-30T19:30:42+01:00
TODO: python3-numba needs to be installable

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30 changed files:

- .github/workflows/testing_develop.yml
- .hgtags
- .sourcery.yaml
- changelog.md
- debian/changelog
- + doc/api/apps/composable.define_app.rst
- doc/api/index.rst
- doc/app/index.rst
- doc/app/user_function.rst
- doc/conf.py
- doc/cookbook/evo_modelling.rst
- doc/cookbook/genetic_code.rst
- doc/cookbook/loading_sequences.rst
- doc/cookbook/loading_tabular.rst
- doc/cookbook/useful_utilities.rst
- − doc/doctest2script.py
- doc/doctest_rsts.py
- doc/examples/codon_models.rst
- doc/examples/hmm_par_heterogeneity.rst
- doc/examples/neutral_test.rst
- doc/examples/parametric_bootstrap.rst
- doc/examples/relative_rate.rst
- doc/examples/testing_multi_loci.rst
- + doc/rst2script.py
- noxfile.py
- pyproject.toml
- requirements.txt
- src/cogent3/__init__.py
- src/cogent3/align/__init__.py
- src/cogent3/align/align.py


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/python-cogent/-/compare/c582a1345bb3d1cae7c55527cdd38622403e914c...54b91582fe6e4d758fdc8ed4fc701da5db0f0515

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View it on GitLab: https://salsa.debian.org/med-team/python-cogent/-/compare/c582a1345bb3d1cae7c55527cdd38622403e914c...54b91582fe6e4d758fdc8ed4fc701da5db0f0515
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