[med-svn] [Git][med-team/python-cogent][upstream] New upstream version 2022.10.31a1+dfsg

[Andreas Tille (@tille)]

Andreas Tille pushed to branch upstream at Debian Med / python-cogent


Commits:
e8c5d143 by Andreas Tille at 2022-11-30T19:25:41+01:00
New upstream version 2022.10.31a1+dfsg
- - - - -


30 changed files:

- .github/workflows/testing_develop.yml
- .hgtags
- .sourcery.yaml
- changelog.md
- + doc/api/apps/composable.define_app.rst
- doc/api/index.rst
- doc/app/index.rst
- doc/app/user_function.rst
- doc/conf.py
- doc/cookbook/evo_modelling.rst
- doc/cookbook/genetic_code.rst
- doc/cookbook/loading_sequences.rst
- doc/cookbook/loading_tabular.rst
- doc/cookbook/useful_utilities.rst
- − doc/doctest2script.py
- doc/doctest_rsts.py
- doc/examples/codon_models.rst
- doc/examples/hmm_par_heterogeneity.rst
- doc/examples/neutral_test.rst
- doc/examples/parametric_bootstrap.rst
- doc/examples/relative_rate.rst
- doc/examples/testing_multi_loci.rst
- + doc/rst2script.py
- noxfile.py
- pyproject.toml
- requirements.txt
- src/cogent3/__init__.py
- src/cogent3/align/__init__.py
- src/cogent3/align/align.py
- src/cogent3/align/compare_numba.py


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/python-cogent/-/commit/e8c5d143fa9f425415eb5f4d960a4cdb3be775d7

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View it on GitLab: https://salsa.debian.org/med-team/python-cogent/-/commit/e8c5d143fa9f425415eb5f4d960a4cdb3be775d7
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