[med-svn] [Git][med-team/pairtools][master] 11 commits: routine-update: New upstream version

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / pairtools


Commits:
3563c81f by Andreas Tille at 2022-09-16T14:08:07+02:00
routine-update: New upstream version

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49d1c456 by Andreas Tille at 2022-09-16T14:08:08+02:00
New upstream version 1.0.1
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3ef38fbe by Andreas Tille at 2022-09-16T14:08:09+02:00
Update upstream source from tag 'upstream/1.0.1'

Update to upstream version '1.0.1'
with Debian dir 10ffcc41c81234db071b55f35db5c91f710c2ed7
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3952a2e0 by Andreas Tille at 2022-09-16T14:08:09+02:00
routine-update: Standards-Version: 4.6.1

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1f753888 by Andreas Tille at 2022-09-16T14:30:02+02:00
Update patches

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c85ba907 by Andreas Tille at 2022-09-16T14:39:32+02:00
Fix clean target

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089df9eb by Andreas Tille at 2022-09-16T14:43:08+02:00
Build-Depends: python3-pysam

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9201b3e3 by Andreas Tille at 2022-09-16T14:44:38+02:00
Build-Depends: libhts-dev

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305b55c0 by Andreas Tille at 2022-09-16T15:11:09+02:00
Build-Depends: python3-pandas

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531c7580 by Andreas Tille at 2022-09-16T15:32:26+02:00
Build-Depends: python3-scipy

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f38c0bfa by Andreas Tille at 2022-09-16T15:39:21+02:00
Build-Depends: python3-yaml <!nocheck>

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23 changed files:

- + .flake8
- + .github/workflows/python-package.yml
- + .github/workflows/python-publish-test.yml
- + .github/workflows/python-publish.yml
- .gitignore
- − .travis.yml
- CHANGES.md
- LICENSE
- README.md
- debian/changelog
- debian/control
- debian/patches/fix-spelling
- − debian/patches/python-3.10
- debian/patches/series
- debian/patches/tests-to-python3
- debian/rules
- doc/Makefile
- + doc/_static/report-orientation.svg
- + doc/_static/report-positions.svg
- + doc/_static/rescue_modes.svg
- + doc/_static/rescue_modes_readthrough.svg
- doc/cli_tools.rst
- doc/conf.py


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/pairtools/-/compare/b5c48dad06e54adde8304d406ba73fe13574e477...f38c0bfa18b3af964b3753a76f0f0129c0b26869

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View it on GitLab: https://salsa.debian.org/med-team/pairtools/-/compare/b5c48dad06e54adde8304d406ba73fe13574e477...f38c0bfa18b3af964b3753a76f0f0129c0b26869
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