[med-svn] [Git][med-team/augustus][master] 8 commits: Fix watch file

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / augustus


Commits:
83b0fbd2 by Andreas Tille at 2022-09-30T12:37:51+02:00
Fix watch file

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ce7269b4 by Andreas Tille at 2022-09-30T12:43:49+02:00
Cleanup d/copyright from unused Files-Excluded

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90f00aa1 by Andreas Tille at 2022-09-30T12:46:21+02:00
routine-update: New upstream version

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aa10faa8 by Andreas Tille at 2022-09-30T12:46:32+02:00
New upstream version 3.5.0+dfsg
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f1e0841e by Andreas Tille at 2022-09-30T12:54:10+02:00
Update upstream source from tag 'upstream/3.5.0+dfsg'

Update to upstream version '3.5.0+dfsg'
with Debian dir dc7b81b3a4722ec884bb519b991a839d63668039
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1ddae5ef by Andreas Tille at 2022-09-30T12:54:10+02:00
routine-update: Standards-Version: 4.6.1

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114129d4 by Andreas Tille at 2022-09-30T12:54:32+02:00
Apply multi-arch hints.
+ augustus-data, augustus-doc: Add Multi-Arch: foreign.

Changes-By: apply-multiarch-hints

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7f62a4ab by Andreas Tille at 2022-09-30T13:05:47+02:00
Refresh patches

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27 changed files:

- + .github/workflows/build_and_test.yml
- − .github/workflows/examples_test.yml
- .gitignore
- − .travis.yml
- Dockerfile
- Makefile
- README.md
- + Singularity.def
- auxprogs/Makefile
- auxprogs/aln2wig/Makefile
- auxprogs/aln2wig/aln2wig.c
- auxprogs/bam2hints/Makefile
- auxprogs/bam2hints/README
- auxprogs/bam2hints/bam2hints.cc
- auxprogs/bam2wig/Makefile
- auxprogs/bam2wig/README.md
- auxprogs/compileSpliceCands/Makefile
- auxprogs/compileSpliceCands/list.c
- auxprogs/filterBam/Makefile
- − auxprogs/filterBam/README
- + auxprogs/filterBam/README.md
- + auxprogs/filterBam/src/BamSeqLibAccess.cc
- + auxprogs/filterBam/src/BamToolsAccess.cc
- auxprogs/filterBam/src/Makefile
- − auxprogs/filterBam/src/bamtools/LICENSE
- − auxprogs/filterBam/src/bamtools/bamtools_sort.h
- − auxprogs/filterBam/src/bamtools/bamtools_tool.h


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/augustus/-/compare/6674827ee19473a1eade67d1e990582a27eebbf1...7f62a4abe5129e2a7cb6876608ff60dc5b46caaa

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View it on GitLab: https://salsa.debian.org/med-team/augustus/-/compare/6674827ee19473a1eade67d1e990582a27eebbf1...7f62a4abe5129e2a7cb6876608ff60dc5b46caaa
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