[med-svn] [Git][med-team/kent-core][master] 2 commits: Override false positive
Andreas Tille (@tille)
gitlab at salsa.debian.org
Mon Apr 17 18:10:48 BST 2023
Andreas Tille pushed to branch master at Debian Med / kent-core
Commits:
df28fe37 by Andreas Tille at 2023-04-17T13:41:15+02:00
Override false positive
- - - - -
c23969f9 by Andreas Tille at 2023-04-17T19:10:25+02:00
Start working on d/copyright
- - - - -
2 changed files:
- debian/copyright
- + debian/source/lintian-overrides
Changes:
=====================================
debian/copyright
=====================================
@@ -1,16 +1,179 @@
Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: kent-core
-Source: <path_to_download>
-Comment: **** Before manually editing this file you should give ****
- scan-copyrights
- **** available in cme + lib-config-model-dpkg-perl ****
- **** package a try. For existing copyright files try ****
- cme update dpkg-copyright
+Source: https://github.com/ucscGenomeBrowser/kent-core
Files: *
-Copyright: 20xx-20yy <upstream>
-License: <license>
+Copyright: 2011-2017 The Regents of the University of California
+License: MIT
+
+Files: src/inc/axt.h
+ src/inc/bedTabix.h
+ src/inc/binRange.h
+ src/inc/bits.h
+ src/inc/cda.h
+ src/inc/cheapcgi.h
+ src/inc/codebias.h
+ src/inc/common.h
+ src/inc/crudeali.h
+ src/inc/dlist.h
+ src/inc/dnaseq.h
+ src/inc/dnautil.h
+ src/inc/dystring.h
+ src/inc/ens.h
+ src/inc/errAbort.h
+ src/inc/fa.h
+ src/inc/flydna.h
+ src/inc/fof.h
+ src/inc/fuzzyFind.h
+ src/inc/gdf.h
+ src/inc/gff.h
+ src/inc/hash.h
+ src/inc/hgap.h
+ src/inc/hgdb.h
+ src/inc/hgGene.h
+ src/inc/hmmstats.h
+ src/inc/htmshell.h
+ src/inc/itsa.h
+ src/inc/keys.h
+ src/inc/kxTok.h
+ src/inc/linefile.h
+ src/inc/localmem.h
+ src/inc/maDbRep.h
+ src/inc/maToFf.h
+ src/inc/memalloc.h
+ src/inc/memgfx.h
+ src/inc/mime.h
+ src/inc/net.h
+ src/inc/nib.h
+ src/inc/nt4.h
+ src/inc/obscure.h
+ src/inc/oldGff.h
+ src/inc/options.h
+ src/inc/pairHmm.h
+ src/inc/patSpace.h
+ src/inc/portable.h
+ src/inc/pscmGfx.h
+ src/inc/psl.h
+ src/inc/quickHeap.h
+ src/inc/ra.h
+ src/inc/rle.h
+ src/inc/shaRes.h
+ src/inc/sig.h
+ src/inc/snof.h
+ src/inc/snofmake.h
+ src/inc/spaceSaver.h
+ src/inc/splatAli.h
+ src/inc/splix.h
+ src/inc/sqlList.h
+ src/inc/sqlNum.h
+ src/inc/subText.h
+ src/inc/sufa.h
+ src/inc/sufx.h
+ src/inc/supStitch.h
+ src/inc/trans3.h
+ src/inc/unfin.h
+ src/inc/wormdna.h
+ src/inc/xa.h
+ src/inc/xap.h
+ src/inc/xenalign.h
+ src/inc/xp.h
+Copyright: 2000-2002 Jim Kent
+License: all_use
+ license is hereby granted for all use - public, private or commercial.
+
+Files: src/fuse/udcFuse/udcFuse.c
+Copyright: 2011 The Regents of the University of California
+License: MIT
+
+Files: src/htslib/*
+Copyright: © 2012-2016 Genome Research Ltd.
+ © 2008-2013 Broad Institute / Massachusetts Institute of Technology
+ © The Wellcome Trust Sanger Institute
+ © 2008-2012 by Attractive Chaos <attractor at live.co.uk>
+Comment: FIXME - should be removed from upstream source in favour of Debian packaged htslib
+License: MIT
+
+Files: src/htslib/cram/*
+Copyright: © 2012-2014 Genome Research Ltd.
+ © 1995-2003 MEDICAL RESEARCH COUNCIL
+Comment: FIXME - should be removed from upstream source in favour of Debian packaged htslib
+License: Various_BSD-3-Clause
+ The files in the 'cram' directory are under one or both of the following
+ licenses.
+ .
+ ---------------------------------------------------------------------------
+ .
+ Redistribution and use in source and binary forms, with or without
+ modification, are permitted provided that the following conditions are met:
+ .
+ 1. Redistributions of source code must retain the above copyright notice,
+ this list of conditions and the following disclaimer.
+ .
+ 2. Redistributions in binary form must reproduce the above copyright notice,
+ this list of conditions and the following disclaimer in the documentation
+ and/or other materials provided with the distribution.
+ .
+ 3. Neither the names Genome Research Ltd and Wellcome Trust Sanger
+ Institute nor the names of its contributors may be used to endorse or promote
+ products derived from this software without specific prior written permission.
+ .
+ THIS SOFTWARE IS PROVIDED BY GENOME RESEARCH LTD AND CONTRIBUTORS "AS IS" AND
+ ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
+ WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
+ DISCLAIMED. IN NO EVENT SHALL GENOME RESEARCH LTD OR CONTRIBUTORS BE LIABLE
+ FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
+ DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
+ SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
+ CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
+ OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
+ OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+ .
+ ---------------------------------------------------------------------------
+ .
+ Redistribution and use in source and binary forms, with or without
+ modification, are permitted provided that the following conditions are met:
+ .
+ 1 Redistributions of source code must retain the above copyright notice,
+ this list of conditions and the following disclaimer.
+ .
+ 2 Redistributions in binary form must reproduce the above copyright notice,
+ this list of conditions and the following disclaimer in the documentation
+ and/or other materials provided with the distribution.
+ .
+ 3 Neither the name of the MEDICAL RESEARCH COUNCIL, THE LABORATORY OF
+ MOLECULAR BIOLOGY nor the names of its contributors may be used to endorse or
+ promote products derived from this software without specific prior written
+ permission.
+ .
+ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
+ ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
+ WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
+ DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
+ ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
+ (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
+ LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON
+ ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
+ (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
+ SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
Files: debian/*
Copyright: 2023 Andreas Tille <tille at debian.org>
-License: <license>
+License: MIT
+
+License: MIT
+ Permission is hereby granted, free of charge, to any person obtaining a copy of
+ this software and associated documentation files (the "Software"), to deal in
+ the Software without restriction, including without limitation the rights to
+ use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of
+ the Software, and to permit persons to whom the Software is furnished to do so,
+ subject to the following conditions:
+ .
+ The above copyright notice and this permission notice shall be included in all
+ copies or substantial portions of the Software.
+ .
+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+ IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS
+ FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR
+ COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER
+ IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN
+ CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
=====================================
debian/source/lintian-overrides
=====================================
@@ -0,0 +1,2 @@
+# See lintian bug #1017966
+kent-core source: source-is-missing [src/lib/tests/input/google.html]
View it on GitLab: https://salsa.debian.org/med-team/kent-core/-/compare/359696f2686a4c011f0fde6027e1d7804904981c...c23969f9465cebbc92001436b3bb5cc1b30ae669
--
View it on GitLab: https://salsa.debian.org/med-team/kent-core/-/compare/359696f2686a4c011f0fde6027e1d7804904981c...c23969f9465cebbc92001436b3bb5cc1b30ae669
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