[med-svn] [Git][med-team/spades][master] 2 commits: d/control: spades is AMD64 only, as per upstream.

Wed Aug 9 14:01:50 BST 2023


Michael R. Crusoe pushed to branch master at Debian Med / spades


Commits:
e701b088 by Michael R. Crusoe at 2023-08-09T14:59:48+02:00
d/control: spades is AMD64 only, as per upstream.

- - - - -
7a60b0e2 by Michael R. Crusoe at 2023-08-09T15:00:06+02:00
d/patches: mark many as not needing forwarding

- - - - -


13 changed files:

- debian/changelog
- debian/control
- debian/patches/0002_use_debian_packaged_python-joblib.patch
- debian/patches/0003_accept-system-bwa.patch
- debian/patches/0101_cmake_ignore_removed_python-yaml.patch
- debian/patches/0102_cmake_ignore_removed_python-joblib.patch
- debian/patches/0103_use-debian-packaged-bwa.patch
- debian/patches/0114_use_debian_provided_libs.patch
- debian/patches/bamtools-cmake.patch
- debian/patches/fix-bool-cast
- debian/patches/python3.patch
- debian/patches/use-debian-packaged-samtools.patch
- debian/patches/use-debian-packaged-yaml-cpp.patch


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,10 @@
+spades (3.15.5+dfsg-4) unstable; urgency=medium
+
+  * d/control: spades is AMD64 only, as per upstream. Closes: #976523
+  * d/patches: mark many as not needing forwarding
+
+ -- Michael R. Crusoe <crusoe at debian.org>  Wed, 09 Aug 2023 12:45:25 +0200
+
 spades (3.15.5+dfsg-3) unstable; urgency=medium
 
   * Team upload.


=====================================
debian/control
=====================================
@@ -37,7 +37,7 @@ Homepage: http://cab.spbu.ru/software/spades/
 Rules-Requires-Root: no
 
 Package: spades
-Architecture: any
+Architecture: amd64
 Depends: ${shlibs:Depends},
          ${python3:Depends},
          ${misc:Depends},


=====================================
debian/patches/0002_use_debian_packaged_python-joblib.patch
=====================================
@@ -1,5 +1,6 @@
 Author: Andreas Tille <tille at debian.org>
 Last-Changed: Tue, 03 Mar 2015 20:55:53 +0100
+Forwarded: not-needed
 Description: We are using Debian packaged python-joblib
  Debian has its own way to distinguish Python versions and there is no point
  in doing this inside the code.


=====================================
debian/patches/0003_accept-system-bwa.patch
=====================================
@@ -1,5 +1,6 @@
 Author: Andreas Tille <tille at debian.org>
 Last-Changed: Tue, 03 Mar 2015 20:55:53 +0100
+Forwarded: not-needed
 Description: Enable using Debian packaged bwa instead of bwa-spades
  Users might have installed a local version of bwa which is used independently
  from SPAdes.  This is specifically true on Debian systems where the


=====================================
debian/patches/0101_cmake_ignore_removed_python-yaml.patch
=====================================
@@ -1,5 +1,6 @@
 Author: Andreas Tille <tille at debian.org>
 Last-Changed: Tue, 03 Mar 2015 20:55:53 +0100
+Forwarded: not-needed
 Description: Since we are using Debian packaged python-yaml
  (see 0001_use_debian_packaged_python-yaml.patch) the dir needs to be
  excluded


=====================================
debian/patches/0102_cmake_ignore_removed_python-joblib.patch
=====================================
@@ -1,5 +1,6 @@
 Author: Andreas Tille <tille at debian.org>
 Last-Changed: Tue, 03 Mar 2015 20:55:53 +0100
+Forwarded: not-needed
 Description: Since we are using Debian packaged python-joblib
  (see 0002_use_debian_packaged_python-joblib.patch) the dir needs to be
  excluded


=====================================
debian/patches/0103_use-debian-packaged-bwa.patch
=====================================
@@ -1,5 +1,6 @@
 Author: Andreas Tille <tille at debian.org>
 Last-Changed: Tue, 18 Feb 2014 15:48:55 +0100
+Forwarded: not-needed
 Description: SPAdes originally contained a code copy of bwa since the version
  of bwa which was current of the time of release did not builded with recent
  gcc versions.  Since this is not the case with Debian shipped bwa this code


=====================================
debian/patches/0114_use_debian_provided_libs.patch
=====================================
@@ -1,6 +1,7 @@
 Description: use more Debian packaged libraries
 Author: Sascha Steinbiss <satta at debian.org>,
         Michael R. Crusoe <michael.crusoe at gmail.com>
+Forwarded: not-needed
 --- a/assembler/src/cmake/includes.cmake
 +++ b/assembler/src/cmake/includes.cmake
 @@ -2,6 +2,8 @@


=====================================
debian/patches/bamtools-cmake.patch
=====================================
@@ -1,3 +1,5 @@
+Author: Andreas Tille <tille at debian.org>
+Forwarded: not-needed
 --- /dev/null
 +++ b/assembler/src/cmake/bamtools-config.cmake
 @@ -0,0 +1,35 @@


=====================================
debian/patches/fix-bool-cast
=====================================
@@ -1,4 +1,4 @@
-From: Michael R. Crusoe <michael.crusoe at gmail.com>
+From: Michael R. Crusoe <crusoe at debian.org>
 Subject: Make explicit cast to bool
 --- a/assembler/src/common/func/pred.hpp
 +++ b/assembler/src/common/func/pred.hpp


=====================================
debian/patches/python3.patch
=====================================
@@ -1,5 +1,6 @@
 Author: Andreas Tille <tille at debian.org>
 Last-Update: Tue, 12 Nov 2019 17:11:17 +0100
+Forwarded: not-needed
 Description: Make sure Python3 interpreter is used in scripts
 
 --- spades.orig/assembler/changer_of_K.py


=====================================
debian/patches/use-debian-packaged-samtools.patch
=====================================
@@ -1,5 +1,6 @@
 Author: Andreas Tille <tille at debian.org>
 Last-Changed: Mon, 23 Feb 2015 21:24:39 +0100
+Forwarded: not-needed
 Description: SPAdes originally contained a code copy of samtools
  Rather use the Debian packaged version
  .


=====================================
debian/patches/use-debian-packaged-yaml-cpp.patch
=====================================
@@ -1,5 +1,6 @@
 Author: Andreas Tille <tille at debian.org>
 Last-Changed: Wed, 05 Feb 2014 15:12:36 +0100
+Forwarded: not-needed
 Description: Try to replace code copy of yaml-cpp
  FIXME: This does not work.  If you run
     /usr/bin/spades.py --test



View it on GitLab: https://salsa.debian.org/med-team/spades/-/compare/d34eca8ac464460a0b8b57cec2d67e910f5d65c5...7a60b0e2f195bc8d02f6e7cdc3c648ffe6e40999

-- 
View it on GitLab: https://salsa.debian.org/med-team/spades/-/compare/d34eca8ac464460a0b8b57cec2d67e910f5d65c5...7a60b0e2f195bc8d02f6e7cdc3c648ffe6e40999
You're receiving this email because of your account on salsa.debian.org.


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20230809/03410e3d/attachment-0001.htm>
