[med-svn] [Git][med-team/libbpp-seq-omics][master] 4 commits: Update symbols file for GCC-13.
Michael R. Crusoe (@crusoe)
gitlab at salsa.debian.org
Sun Aug 13 11:28:39 BST 2023
Michael R. Crusoe pushed to branch master at Debian Med / libbpp-seq-omics
Commits:
68847b45 by Michael R. Crusoe at 2023-08-13T12:17:31+02:00
Update symbols file for GCC-13.
Closes: #1037718, #1037721, #1037722, #1042137, #1042139, #1042204, #1042230
- - - - -
871ccb36 by Michael R. Crusoe at 2023-08-13T12:17:40+02:00
routine-update: Standards-Version: 4.6.2
- - - - -
e742f33d by Michael R. Crusoe at 2023-08-13T12:27:17+02:00
d/control: use ${devlibs:Depends} for libbpp-seq-omics-dev
- - - - -
97eab2b2 by Michael R. Crusoe at 2023-08-13T12:27:22+02:00
release 2.4.1-10
- - - - -
3 changed files:
- debian/changelog
- debian/control
- debian/libbpp-seq-omics3.symbols.amd64
Changes:
=====================================
debian/changelog
=====================================
@@ -1,3 +1,13 @@
+libbpp-seq-omics (2.4.1-10) unstable; urgency=medium
+
+ * Team upload.
+ * Update symbols file for GCC-13.
+ Closes: #1037718, #1037721, #1037722, #1042137, #1042139, #1042204, #1042230
+ * Standards-Version: 4.6.2 (routine-update)
+ * d/control: use ${devlibs:Depends} for libbpp-seq-omics-dev
+
+ -- Michael R. Crusoe <crusoe at debian.org> Sun, 13 Aug 2023 12:22:12 +0200
+
libbpp-seq-omics (2.4.1-9) unstable; urgency=medium
* Fix watch file
=====================================
debian/control
=====================================
@@ -8,7 +8,7 @@ Build-Depends: debhelper-compat (= 13),
cmake,
d-shlibs,
libbpp-seq-dev
-Standards-Version: 4.6.1
+Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/med-team/libbpp-seq-omics
Vcs-Git: https://salsa.debian.org/med-team/libbpp-seq-omics.git
Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page
@@ -19,7 +19,7 @@ Architecture: any
Section: libdevel
Depends: libbpp-seq-omics3 (= ${binary:Version}),
${misc:Depends},
- libbpp-seq-dev
+ ${devlibs:Depends}
Multi-Arch: same
Description: Bio++ Sequence library: genomics components (development files)
Bio++ is a set of C++ libraries for Bioinformatics, including sequence
=====================================
debian/libbpp-seq-omics3.symbols.amd64
=====================================
@@ -4,6 +4,7 @@ libbpp-seq-omics.so.3 libbpp-seq-omics3 #MINVER#
_ZN3bpp10MultiRangeImE10restrictToERKNS_5RangeImEE at Base 2.4.1
_ZN3bpp10MultiRangeImE12filterWithinERKNS_5RangeImEE at Base 2.4.1
_ZN3bpp10MultiRangeImE5clearEv at Base 2.4.1
+ _ZN3bpp10MultiRangeImE6clean_Ev at Base 2.4.1
_ZN3bpp10MultiRangeImE8addRangeERKNS_5RangeImEE at Base 2.4.1
_ZN3bpp10MultiRangeImED0Ev at Base 2.4.1
_ZN3bpp10MultiRangeImED1Ev at Base 2.4.1
@@ -43,7 +44,6 @@ libbpp-seq-omics.so.3 libbpp-seq-omics3 #MINVER#
_ZN3bpp13AlphabetStateD0Ev at Base 2.4.1
_ZN3bpp13AlphabetStateD1Ev at Base 2.4.1
_ZN3bpp13BasicSequenceD0Ev at Base 2.4.1
- _ZN3bpp13BasicSequenceD1Ev at Base 2.4.1
_ZN3bpp13SequenceTools6subseqERKNS_8SequenceEmmRS1_ at Base 2.4.1
_ZN3bpp13SiteContainerD2Ev at Base 2.4.1
_ZN3bpp14LetterAlphabet13registerStateEPNS_13AlphabetStateE at Base 2.4.1
@@ -479,6 +479,8 @@ libbpp-seq-omics.so.3 libbpp-seq-omics3 #MINVER#
_ZNKSt5ctypeIcE8do_widenEc at Base 2.4.1
_ZNSt10unique_ptrIN3bpp11MafSequenceESt14default_deleteIS1_EED1Ev at Base 2.4.1
_ZNSt10unique_ptrIN3bpp11MafSequenceESt14default_deleteIS1_EED2Ev at Base 2.4.1
+ _ZNSt10unique_ptrIN3bpp13BasicSequenceESt14default_deleteIS1_EED1Ev at Base 2.4.1
+ _ZNSt10unique_ptrIN3bpp13BasicSequenceESt14default_deleteIS1_EED2Ev at Base 2.4.1
_ZNSt10unique_ptrIN3bpp13SiteContainerESt14default_deleteIS1_EED1Ev at Base 2.4.1
_ZNSt10unique_ptrIN3bpp13SiteContainerESt14default_deleteIS1_EED2Ev at Base 2.4.1
_ZNSt10unique_ptrIN3bpp18SequenceFeatureSetESt14default_deleteIS1_EED1Ev at Base 2.4.1
@@ -492,20 +494,8 @@ libbpp-seq-omics.so.3 libbpp-seq-omics3 #MINVER#
_ZNSt11_Deque_baseImSaImEED2Ev at Base 2.4.1
_ZNSt12_Vector_baseINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED1Ev at Base 2.4.1
_ZNSt12_Vector_baseINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED2Ev at Base 2.4.1
- _ZNSt12_Vector_baseIPKN3bpp10BppNumberIESaIS3_EED1Ev at Base 2.4.1
- _ZNSt12_Vector_baseIPKN3bpp10BppNumberIESaIS3_EED2Ev at Base 2.4.1
- _ZNSt12_Vector_baseIPKN3bpp11MafSequenceESaIS3_EED1Ev at Base 2.4.1
- _ZNSt12_Vector_baseIPKN3bpp11MafSequenceESaIS3_EED2Ev at Base 2.4.1
- _ZNSt12_Vector_baseIPN3bpp13MafStatisticsESaIS2_EED1Ev at Base 2.4.1
- _ZNSt12_Vector_baseIPN3bpp13MafStatisticsESaIS2_EED2Ev at Base 2.4.1
- _ZNSt12_Vector_baseIPN3bpp13SiteContainerESaIS2_EED1Ev at Base 2.4.1
- _ZNSt12_Vector_baseIPN3bpp13SiteContainerESaIS2_EED2Ev at Base 2.4.1
_ZNSt12_Vector_baseISt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS6_EESaIS8_EED1Ev at Base 2.4.1
_ZNSt12_Vector_baseISt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS6_EESaIS8_EED2Ev at Base 2.4.1
- _ZNSt12_Vector_baseIiSaIiEED1Ev at Base 2.4.1
- _ZNSt12_Vector_baseIiSaIiEED2Ev at Base 2.4.1
- _ZNSt12_Vector_baseImSaImEED1Ev at Base 2.4.1
- _ZNSt12_Vector_baseImSaImEED2Ev at Base 2.4.1
_ZNSt13_Bvector_baseISaIbEE13_M_deallocateEv at Base 2.4.1
_ZNSt15_Sp_counted_ptrIDnLN9__gnu_cxx12_Lock_policyE2EE10_M_disposeEv at Base 2.4.1
_ZNSt16_Sp_counted_baseILN9__gnu_cxx12_Lock_policyE2EE10_M_destroyEv at Base 2.4.1
@@ -525,14 +515,21 @@ libbpp-seq-omics.so.3 libbpp-seq-omics3 #MINVER#
_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED1Ev at Base 2.4.1
_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED2Ev at Base 2.4.1
_ZNSt6vectorIPKN3bpp10BppNumberIESaIS3_EE17_M_default_appendEm at Base 2.4.1
+ _ZNSt6vectorIPKN3bpp10BppNumberIESaIS3_EED1Ev at Base 2.4.1
+ _ZNSt6vectorIPKN3bpp10BppNumberIESaIS3_EED2Ev at Base 2.4.1
_ZNSt6vectorIPKN3bpp11MafSequenceESaIS3_EE17_M_realloc_insertIJRKS3_EEEvN9__gnu_cxx17__normal_iteratorIPS3_S5_EEDpOT_ at Base 2.4.1
+ _ZNSt6vectorIPKN3bpp11MafSequenceESaIS3_EED1Ev at Base 2.4.1
+ _ZNSt6vectorIPKN3bpp11MafSequenceESaIS3_EED2Ev at Base 2.4.1
_ZNSt6vectorIPN3bpp13AlphabetStateESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_ at Base 2.4.1
+ _ZNSt6vectorIPN3bpp13MafStatisticsESaIS2_EED1Ev at Base 2.4.1
+ _ZNSt6vectorIPN3bpp13MafStatisticsESaIS2_EED2Ev at Base 2.4.1
_ZNSt6vectorIPN3bpp13SiteContainerESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_ at Base 2.4.1
+ _ZNSt6vectorIPN3bpp13SiteContainerESaIS2_EED1Ev at Base 2.4.1
+ _ZNSt6vectorIPN3bpp13SiteContainerESaIS2_EED2Ev at Base 2.4.1
_ZNSt6vectorIPN3bpp15SequenceFeatureESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_ at Base 2.4.1
_ZNSt6vectorIPN3bpp17IterationListenerESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_ at Base 2.4.1
_ZNSt6vectorIPN3bpp18SymbolListListenerESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_ at Base 2.4.1
_ZNSt6vectorIPN3bpp5RangeImEESaIS3_EE17_M_realloc_insertIJS3_EEEvN9__gnu_cxx17__normal_iteratorIPS3_S5_EEDpOT_ at Base 2.4.1
- _ZNSt6vectorIPN3bpp5RangeImEESaIS3_EE8_M_eraseEN9__gnu_cxx17__normal_iteratorIPS3_S5_EE at Base 2.4.1
_ZNSt6vectorIS_INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EESaIS7_EED1Ev at Base 2.4.1
_ZNSt6vectorIS_INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EESaIS7_EED2Ev at Base 2.4.1
_ZNSt6vectorIS_IbSaIbEESaIS1_EE17_M_realloc_insertIJRKS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_ at Base 2.4.1
@@ -546,10 +543,16 @@ libbpp-seq-omics.so.3 libbpp-seq-omics3 #MINVER#
_ZNSt6vectorIbSaIbEEC2ERKS1_ at Base 2.4.1
_ZNSt6vectorIiSaIiEE17_M_default_appendEm at Base 2.4.1
_ZNSt6vectorIiSaIiEE17_M_realloc_insertIJRKiEEEvN9__gnu_cxx17__normal_iteratorIPiS1_EEDpOT_ at Base 2.4.1
+ _ZNSt6vectorIiSaIiEED1Ev at Base 2.4.1
+ _ZNSt6vectorIiSaIiEED2Ev at Base 2.4.1
_ZNSt6vectorIjSaIjEE14_M_fill_assignEmRKj at Base 2.4.1
_ZNSt6vectorIjSaIjEE17_M_realloc_insertIJjEEEvN9__gnu_cxx17__normal_iteratorIPjS1_EEDpOT_ at Base 2.4.1
_ZNSt6vectorImSaImEE17_M_realloc_insertIJRKmEEEvN9__gnu_cxx17__normal_iteratorIPmS1_EEDpOT_ at Base 2.4.1
_ZNSt6vectorImSaImEE17_M_realloc_insertIJmEEEvN9__gnu_cxx17__normal_iteratorIPmS1_EEDpOT_ at Base 2.4.1
+ _ZNSt6vectorImSaImEEC1ISt15_Deque_iteratorImRmPmEvEET_S7_RKS0_ at Base 2.4.1
+ _ZNSt6vectorImSaImEEC2ISt15_Deque_iteratorImRmPmEvEET_S7_RKS0_ at Base 2.4.1
+ _ZNSt6vectorImSaImEED1Ev at Base 2.4.1
+ _ZNSt6vectorImSaImEED2Ev at Base 2.4.1
_ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEC1IS3_EEPKcRKS3_ at Base 2.4.1
_ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEC2IS3_EEPKcRKS3_ at Base 2.4.1
_ZNSt7__cxx1115basic_stringbufIcSt11char_traitsIcESaIcEED0Ev at Base 2.4.1
@@ -568,33 +571,11 @@ libbpp-seq-omics.so.3 libbpp-seq-omics3 #MINVER#
_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_jESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE24_M_get_insert_unique_posERS7_ at Base 2.4.1
_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_jESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS8_ERS7_ at Base 2.4.1
_ZNSt8_Rb_treeIPN3bpp5RangeImEES3_St9_IdentityIS3_ENS0_10rangeComp_ImEESaIS3_EE16_M_insert_uniqueIS3_EESt4pairISt17_Rb_tree_iteratorIS3_EbEOT_ at Base 2.4.1
- _ZNSt8_Rb_treeIPN3bpp5RangeImEES3_St9_IdentityIS3_ENS0_10rangeComp_ImEESaIS3_EE24_M_get_insert_unique_posERKS3_ at Base 2.4.1
- _ZNSt8_Rb_treeIPN3bpp5RangeImEES3_St9_IdentityIS3_ENS0_10rangeComp_ImEESaIS3_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS3_ERKS3_ at Base 2.4.1
- _ZNSt8_Rb_treeIcSt4pairIKcSt3mapImS2_ImmSt4lessImESaIS0_IKmmEEES4_SaIS0_IS5_S8_EEEESt10_Select1stISC_ES3_IcESaISC_EE24_M_get_insert_unique_posERS1_ at Base 2.4.1
- _ZNSt8_Rb_treeIcSt4pairIKcSt3mapImS2_ImmSt4lessImESaIS0_IKmmEEES4_SaIS0_IS5_S8_EEEESt10_Select1stISC_ES3_IcESaISC_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorISC_ERS1_ at Base 2.4.1
- _ZNSt8_Rb_treeIiSt4pairIKiNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEESt10_Select1stIS8_ESt4lessIiESaIS8_EE24_M_get_insert_unique_posERS1_ at Base 2.4.1
- _ZNSt8_Rb_treeIiSt4pairIKiNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEESt10_Select1stIS8_ESt4lessIiESaIS8_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS8_ERS1_ at Base 2.4.1
- _ZNSt8_Rb_treeIiSt4pairIKidESt10_Select1stIS2_ESt4lessIiESaIS2_EE24_M_get_insert_unique_posERS1_ at Base 2.4.1
- _ZNSt8_Rb_treeIiSt4pairIKidESt10_Select1stIS2_ESt4lessIiESaIS2_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS2_ERS1_ at Base 2.4.1
- _ZNSt8_Rb_treeIiSt4pairIKiiESt10_Select1stIS2_ESt4lessIiESaIS2_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJRS1_EESD_IJEEEEESt17_Rb_tree_iteratorIS2_ESt23_Rb_tree_const_iteratorIS2_EDpOT_ at Base 2.4.1
- _ZNSt8_Rb_treeIiSt4pairIKiiESt10_Select1stIS2_ESt4lessIiESaIS2_EE24_M_get_insert_unique_posERS1_ at Base 2.4.1
- _ZNSt8_Rb_treeIiSt4pairIKiiESt10_Select1stIS2_ESt4lessIiESaIS2_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS2_ERS1_ at Base 2.4.1
- _ZNSt8_Rb_treeIiSt4pairIKijESt10_Select1stIS2_ESt4lessIiESaIS2_EE24_M_get_insert_unique_posERS1_ at Base 2.4.1
- _ZNSt8_Rb_treeIiSt4pairIKijESt10_Select1stIS2_ESt4lessIiESaIS2_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS2_ERS1_ at Base 2.4.1
- _ZNSt8_Rb_treeIiSt4pairIKimESt10_Select1stIS2_ESt4lessIiESaIS2_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJRS1_EESD_IJEEEEESt17_Rb_tree_iteratorIS2_ESt23_Rb_tree_const_iteratorIS2_EDpOT_ at Base 2.4.1
- _ZNSt8_Rb_treeIiSt4pairIKimESt10_Select1stIS2_ESt4lessIiESaIS2_EE24_M_get_insert_unique_posERS1_ at Base 2.4.1
- _ZNSt8_Rb_treeIiSt4pairIKimESt10_Select1stIS2_ESt4lessIiESaIS2_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS2_ERS1_ at Base 2.4.1
- _ZNSt8_Rb_treeImSt4pairIKmSt3mapImmSt4lessImESaIS0_IS1_mEEEESt10_Select1stIS8_ES4_SaIS8_EE24_M_get_insert_unique_posERS1_ at Base 2.4.1
- _ZNSt8_Rb_treeImSt4pairIKmSt3mapImmSt4lessImESaIS0_IS1_mEEEESt10_Select1stIS8_ES4_SaIS8_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS8_ERS1_ at Base 2.4.1
- _ZNSt8_Rb_treeImSt4pairIKmmESt10_Select1stIS2_ESt4lessImESaIS2_EE24_M_get_insert_unique_posERS1_ at Base 2.4.1
- _ZNSt8_Rb_treeImSt4pairIKmmESt10_Select1stIS2_ESt4lessImESaIS2_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS2_ERS1_ at Base 2.4.1
_ZSt13__heap_selectIN9__gnu_cxx17__normal_iteratorIPNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt6vectorIS7_SaIS7_EEEENS0_5__ops15_Iter_less_iterEEvT_SF_SF_T0_ at Base 2.4.1
_ZSt16__do_uninit_copyIN9__gnu_cxx17__normal_iteratorIPKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt6vectorIS7_SaIS7_EEEEPS7_ET0_T_SG_SF_ at Base 2.4.1
_ZSt16__introsort_loopIN9__gnu_cxx17__normal_iteratorIPPN3bpp5RangeImEESt6vectorIS5_SaIS5_EEEElNS0_5__ops15_Iter_comp_iterINS2_10rangeComp_ImEEEEEvT_SG_T0_T1_ at Base 2.4.1
- _ZSt19piecewise_construct at Base 2.4.1
_ZStplIcSt11char_traitsIcESaIcEENSt7__cxx1112basic_stringIT_T0_T1_EEOS8_S9_ at Base 2.4.1
_ZStplIcSt11char_traitsIcESaIcEENSt7__cxx1112basic_stringIT_T0_T1_EEPKS5_OS8_ at Base 2.4.1
- _ZStplIcSt11char_traitsIcESaIcEENSt7__cxx1112basic_stringIT_T0_T1_EEPKS5_RKS8_ at Base 2.4.1
_ZTIN3bpp10BppIntegerE at Base 2.4.1
_ZTIN3bpp10BppNumberIE at Base 2.4.1
_ZTIN3bpp10MultiRangeImEE at Base 2.4.1
@@ -984,7 +965,6 @@ libbpp-seq-omics.so.3 libbpp-seq-omics3 #MINVER#
_ZTv0_n24_N3bpp13AlphabetStateD0Ev at Base 2.4.1
_ZTv0_n24_N3bpp13AlphabetStateD1Ev at Base 2.4.1
_ZTv0_n24_N3bpp13BasicSequenceD0Ev at Base 2.4.1
- _ZTv0_n24_N3bpp13BasicSequenceD1Ev at Base 2.4.1
_ZTv0_n24_N3bpp15SequenceQualityD0Ev at Base 2.4.1
_ZTv0_n24_N3bpp16GffFeatureReaderD0Ev at Base 2.4.1
_ZTv0_n24_N3bpp16GffFeatureReaderD1Ev at Base 2.4.1
View it on GitLab: https://salsa.debian.org/med-team/libbpp-seq-omics/-/compare/ab74161798d6f11c584ea09a3c54a7610d3f0afe...97eab2b2be493d1eefab66797babd2ba31dd3626
--
View it on GitLab: https://salsa.debian.org/med-team/libbpp-seq-omics/-/compare/ab74161798d6f11c584ea09a3c54a7610d3f0afe...97eab2b2be493d1eefab66797babd2ba31dd3626
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