[med-svn] [Git][med-team/libbpp-seq][master] 6 commits: routine-update: Packaging update
Michael R. Crusoe (@crusoe)
gitlab at salsa.debian.org
Sun Aug 13 12:59:40 BST 2023
Michael R. Crusoe pushed to branch master at Debian Med / libbpp-seq
Commits:
36a52c90 by Michael R. Crusoe at 2023-08-13T13:29:22+02:00
routine-update: Packaging update
- - - - -
3d1c3729 by Michael R. Crusoe at 2023-08-13T13:29:40+02:00
routine-update: Standards-Version: 4.6.2
- - - - -
91ce446a by Michael R. Crusoe at 2023-08-13T13:39:42+02:00
Update symbols for gcc-13. Closes: #1037721, #1042204
- - - - -
a602db70 by Michael R. Crusoe at 2023-08-13T13:57:36+02:00
d/patches/spelling: fix a typo
- - - - -
fedd2e7b by Michael R. Crusoe at 2023-08-13T13:57:42+02:00
d/control: Use ${devlibs:Depends} for the -dev package.
- - - - -
c14eebc8 by Michael R. Crusoe at 2023-08-13T13:57:42+02:00
routine-update: Ready to upload to unstable
- - - - -
5 changed files:
- debian/changelog
- debian/control
- debian/libbpp-seq12.symbols.amd64
- debian/patches/series
- + debian/patches/spelling
Changes:
=====================================
debian/changelog
=====================================
@@ -1,3 +1,13 @@
+libbpp-seq (2.4.1-10) unstable; urgency=medium
+
+ * Team upload.
+ * Standards-Version: 4.6.2 (routine-update)
+ * Update symbols for gcc-13. Closes: #1037721, #1042204
+ * d/patches/spelling: fix a typo
+ * d/control: Use ${devlibs:Depends} for the -dev package.
+
+ -- Michael R. Crusoe <crusoe at debian.org> Sun, 13 Aug 2023 13:21:18 +0200
+
libbpp-seq (2.4.1-9) unstable; urgency=medium
* Fix watch file
=====================================
debian/control
=====================================
@@ -8,7 +8,7 @@ Build-Depends: debhelper-compat (= 13),
cmake,
d-shlibs,
libbpp-core-dev
-Standards-Version: 4.6.1
+Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/med-team/libbpp-seq
Vcs-Git: https://salsa.debian.org/med-team/libbpp-seq.git
Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page
@@ -19,7 +19,7 @@ Architecture: any
Section: libdevel
Depends: libbpp-seq12 (= ${binary:Version}),
${misc:Depends},
- libbpp-core-dev
+ ${devlibs:Depends}
Multi-Arch: same
Description: Bio++ Sequence library development files
Bio++ is a set of C++ libraries for Bioinformatics, including sequence
=====================================
debian/libbpp-seq12.symbols.amd64
=====================================
@@ -1,9 +1,11 @@
libbpp-seq.so.12 libbpp-seq12 #MINVER#
+* Build-Depends-Package: libbpp-seq-dev
_ZN3bpp10BowkerTestD0Ev at Base 2.4.1
_ZN3bpp10BowkerTestD1Ev at Base 2.4.1
_ZN3bpp10MultiRangeImE10restrictToERKNS_5RangeImEE at Base 2.4.1
_ZN3bpp10MultiRangeImE12filterWithinERKNS_5RangeImEE at Base 2.4.1
_ZN3bpp10MultiRangeImE5clearEv at Base 2.4.1
+ _ZN3bpp10MultiRangeImE6clean_Ev at Base 2.4.1
_ZN3bpp10MultiRangeImE8addRangeERKNS_5RangeImEE at Base 2.4.1
_ZN3bpp10MultiRangeImED0Ev at Base 2.4.1
_ZN3bpp10MultiRangeImED1Ev at Base 2.4.1
@@ -83,7 +85,6 @@ libbpp-seq.so.12 libbpp-seq12 #MINVER#
_ZN3bpp12WordAlphabetC2ERKSt6vectorIPKNS_8AlphabetESaIS4_EE at Base 2.4.1
_ZN3bpp12WordAlphabetD0Ev at Base 2.4.1
_ZN3bpp12WordAlphabetD1Ev at Base 2.4.1
- _ZN3bpp13AAChargeIndexC1Ev at Base 2.4.1
_ZN3bpp13AAChargeIndexD0Ev at Base 2.4.1
_ZN3bpp13AAChargeIndexD1Ev at Base 2.4.1
_ZN3bpp13AAIndex1EntryC1ERSi at Base 2.4.1
@@ -94,7 +95,6 @@ libbpp-seq.so.12 libbpp-seq12 #MINVER#
_ZN3bpp13AAIndex2EntryC2ERSib at Base 2.4.1
_ZN3bpp13AAIndex2EntryD0Ev at Base 2.4.1
_ZN3bpp13AAIndex2EntryD1Ev at Base 2.4.1
- _ZN3bpp13AAVolumeIndexC1Ev at Base 2.4.1
_ZN3bpp13AAVolumeIndexD0Ev at Base 2.4.1
_ZN3bpp13AAVolumeIndexD1Ev at Base 2.4.1
_ZN3bpp13AlphabetStateC1EiRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES8_ at Base 2.4.1
@@ -186,7 +186,6 @@ libbpp-seq.so.12 libbpp-seq12 #MINVER#
_ZN3bpp13SiteExceptionD0Ev at Base 2.4.1
_ZN3bpp13SiteExceptionD1Ev at Base 2.4.1
_ZN3bpp13SiteExceptionD2Ev at Base 2.4.1
- _ZN3bpp14AASEA1030IndexC1Ev at Base 2.4.1
_ZN3bpp14AASEA1030IndexD0Ev at Base 2.4.1
_ZN3bpp14AASEA1030IndexD1Ev at Base 2.4.1
_ZN3bpp14AASurfaceIndexD0Ev at Base 2.4.1
@@ -221,10 +220,8 @@ libbpp-seq.so.12 libbpp-seq12 #MINVER#
_ZN3bpp14LetterAlphabetD2Ev at Base 2.4.1
_ZN3bpp14SequenceWalker19getSequencePositionEm at Base 2.4.1
_ZN3bpp14SequenceWalker20getAlignmentPositionEm at Base 2.4.1
- _ZN3bpp15AASEAInf10IndexC1Ev at Base 2.4.1
_ZN3bpp15AASEAInf10IndexD0Ev at Base 2.4.1
_ZN3bpp15AASEAInf10IndexD1Ev at Base 2.4.1
- _ZN3bpp15AASEASup30IndexC1Ev at Base 2.4.1
_ZN3bpp15AASEASup30IndexD0Ev at Base 2.4.1
_ZN3bpp15AASEASup30IndexD1Ev at Base 2.4.1
_ZN3bpp15BadIntExceptionC1EiRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPKNS_8AlphabetE at Base 2.4.1
@@ -510,11 +507,11 @@ libbpp-seq.so.12 libbpp-seq12 #MINVER#
_ZN3bpp20AbstractCoreSequenceD2Ev at Base 2.4.1
_ZN3bpp20AlphabetNumericStateD0Ev at Base 2.4.1
_ZN3bpp20AlphabetNumericStateD1Ev at Base 2.4.1
+ _ZN3bpp20EmptyVectorExceptionIdEC1ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPKSt6vectorIdSaIdEE at Base 2.4.1
+ _ZN3bpp20EmptyVectorExceptionIdEC2ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPKSt6vectorIdSaIdEE at Base 2.4.1
_ZN3bpp20EmptyVectorExceptionIdED0Ev at Base 2.4.1
_ZN3bpp20EmptyVectorExceptionIdED1Ev at Base 2.4.1
_ZN3bpp20EmptyVectorExceptionIdED2Ev at Base 2.4.1
- _ZN3bpp20EmptyVectorExceptionImEC1ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPKSt6vectorImSaImEE at Base 2.4.1
- _ZN3bpp20EmptyVectorExceptionImEC2ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPKSt6vectorImSaImEE at Base 2.4.1
_ZN3bpp20EmptyVectorExceptionImED0Ev at Base 2.4.1
_ZN3bpp20EmptyVectorExceptionImED1Ev at Base 2.4.1
_ZN3bpp20EmptyVectorExceptionImED2Ev at Base 2.4.1
@@ -753,6 +750,7 @@ libbpp-seq.so.12 libbpp-seq12 #MINVER#
_ZN3bpp25AbstractSequenceContainer11setCommentsERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKSt6vectorIS6_SaIS6_EE at Base 2.4.1
_ZN3bpp25AbstractSequenceContainer18setGeneralCommentsERKSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EE at Base 2.4.1
_ZN3bpp25AbstractSequenceContainer21deleteGeneralCommentsEv at Base 2.4.1
+ _ZN3bpp25AbstractSequenceContainerC2ERKNS_17SequenceContainerE at Base 2.4.1
_ZN3bpp25AbstractSequenceContainerD2Ev at Base 2.4.1
_ZN3bpp25AlphabetMismatchExceptionC1ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPKNS_8AlphabetESB_ at Base 2.4.1
_ZN3bpp25AlphabetMismatchExceptionC2ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPKNS_8AlphabetESB_ at Base 2.4.1
@@ -1731,28 +1729,12 @@ libbpp-seq.so.12 libbpp-seq12 #MINVER#
_ZNSt11_Deque_baseIiSaIiEED2Ev at Base 2.4.1
_ZNSt12_Vector_baseINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED1Ev at Base 2.4.1
_ZNSt12_Vector_baseINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED2Ev at Base 2.4.1
- _ZNSt12_Vector_baseIPKN3bpp8AlphabetESaIS3_EED1Ev at Base 2.4.1
- _ZNSt12_Vector_baseIPKN3bpp8AlphabetESaIS3_EED2Ev at Base 2.4.1
- _ZNSt12_Vector_baseIPN3bpp13AlphabetStateESaIS2_EED1Ev at Base 2.4.1
- _ZNSt12_Vector_baseIPN3bpp13AlphabetStateESaIS2_EED2Ev at Base 2.4.1
- _ZNSt12_Vector_baseIPN3bpp18SymbolListListenerESaIS2_EED1Ev at Base 2.4.1
- _ZNSt12_Vector_baseIPN3bpp18SymbolListListenerESaIS2_EED2Ev at Base 2.4.1
- _ZNSt12_Vector_baseIPN3bpp4SiteESaIS2_EED1Ev at Base 2.4.1
- _ZNSt12_Vector_baseIPN3bpp4SiteESaIS2_EED2Ev at Base 2.4.1
- _ZNSt12_Vector_baseIPN3bpp8SequenceESaIS2_EED1Ev at Base 2.4.1
- _ZNSt12_Vector_baseIPN3bpp8SequenceESaIS2_EED2Ev at Base 2.4.1
- _ZNSt12_Vector_baseIPSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS6_EESaIS9_EED1Ev at Base 2.4.1
- _ZNSt12_Vector_baseIPSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS6_EESaIS9_EED2Ev at Base 2.4.1
_ZNSt12_Vector_baseISt6vectorIdSaIdEESaIS2_EED1Ev at Base 2.4.1
_ZNSt12_Vector_baseISt6vectorIdSaIdEESaIS2_EED2Ev at Base 2.4.1
_ZNSt12_Vector_baseIcSaIcEED1Ev at Base 2.4.1
_ZNSt12_Vector_baseIcSaIcEED2Ev at Base 2.4.1
- _ZNSt12_Vector_baseIdSaIdEED1Ev at Base 2.4.1
- _ZNSt12_Vector_baseIdSaIdEED2Ev at Base 2.4.1
_ZNSt12_Vector_baseIiSaIiEED1Ev at Base 2.4.1
_ZNSt12_Vector_baseIiSaIiEED2Ev at Base 2.4.1
- _ZNSt12_Vector_baseImSaImEED1Ev at Base 2.4.1
- _ZNSt12_Vector_baseImSaImEED2Ev at Base 2.4.1
_ZNSt13_Bvector_baseISaIbEE13_M_deallocateEv at Base 2.4.1
_ZNSt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES5_St4lessIS5_ESaISt4pairIKS5_S5_EEEixEOS5_ at Base 2.4.1
_ZNSt5dequeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED1Ev at Base 2.4.1
@@ -1770,20 +1752,32 @@ libbpp-seq.so.12 libbpp-seq12 #MINVER#
_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED2Ev at Base 2.4.1
_ZNSt6vectorIPKN3bpp8AlphabetESaIS3_EE17_M_realloc_insertIJRKS3_EEEvN9__gnu_cxx17__normal_iteratorIPS3_S5_EEDpOT_ at Base 2.4.1
_ZNSt6vectorIPKN3bpp8AlphabetESaIS3_EE17_M_realloc_insertIJS3_EEEvN9__gnu_cxx17__normal_iteratorIPS3_S5_EEDpOT_ at Base 2.4.1
+ _ZNSt6vectorIPKN3bpp8AlphabetESaIS3_EED1Ev at Base 2.4.1
+ _ZNSt6vectorIPKN3bpp8AlphabetESaIS3_EED2Ev at Base 2.4.1
_ZNSt6vectorIPN3bpp13AlphabetStateESaIS2_EE17_M_default_appendEm at Base 2.4.1
_ZNSt6vectorIPN3bpp13AlphabetStateESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_ at Base 2.4.1
_ZNSt6vectorIPN3bpp13AlphabetStateESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_ at Base 2.4.1
+ _ZNSt6vectorIPN3bpp13AlphabetStateESaIS2_EED1Ev at Base 2.4.1
+ _ZNSt6vectorIPN3bpp13AlphabetStateESaIS2_EED2Ev at Base 2.4.1
_ZNSt6vectorIPN3bpp18SymbolListListenerESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_ at Base 2.4.1
+ _ZNSt6vectorIPN3bpp18SymbolListListenerESaIS2_EED1Ev at Base 2.4.1
+ _ZNSt6vectorIPN3bpp18SymbolListListenerESaIS2_EED2Ev at Base 2.4.1
+ _ZNSt6vectorIPN3bpp4SiteESaIS2_EE13_M_insert_auxIS2_EEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEOT_ at Base 2.4.1
_ZNSt6vectorIPN3bpp4SiteESaIS2_EE17_M_default_appendEm at Base 2.4.1
_ZNSt6vectorIPN3bpp4SiteESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_ at Base 2.4.1
_ZNSt6vectorIPN3bpp4SiteESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_ at Base 2.4.1
+ _ZNSt6vectorIPN3bpp4SiteESaIS2_EED1Ev at Base 2.4.1
+ _ZNSt6vectorIPN3bpp4SiteESaIS2_EED2Ev at Base 2.4.1
_ZNSt6vectorIPN3bpp5RangeImEESaIS3_EE17_M_realloc_insertIJS3_EEEvN9__gnu_cxx17__normal_iteratorIPS3_S5_EEDpOT_ at Base 2.4.1
- _ZNSt6vectorIPN3bpp5RangeImEESaIS3_EE8_M_eraseEN9__gnu_cxx17__normal_iteratorIPS3_S5_EE at Base 2.4.1
_ZNSt6vectorIPN3bpp8SequenceESaIS2_EE17_M_default_appendEm at Base 2.4.1
_ZNSt6vectorIPN3bpp8SequenceESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_ at Base 2.4.1
_ZNSt6vectorIPN3bpp8SequenceESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_ at Base 2.4.1
+ _ZNSt6vectorIPN3bpp8SequenceESaIS2_EED1Ev at Base 2.4.1
+ _ZNSt6vectorIPN3bpp8SequenceESaIS2_EED2Ev at Base 2.4.1
_ZNSt6vectorIPS_INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EESaIS8_EE17_M_default_appendEm at Base 2.4.1
_ZNSt6vectorIPS_INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EESaIS8_EE17_M_realloc_insertIJS8_EEEvN9__gnu_cxx17__normal_iteratorIPS8_SA_EEDpOT_ at Base 2.4.1
+ _ZNSt6vectorIPS_INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EESaIS8_EED1Ev at Base 2.4.1
+ _ZNSt6vectorIPS_INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EESaIS8_EED2Ev at Base 2.4.1
_ZNSt6vectorIS_INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EESaIS7_EED1Ev at Base 2.4.1
_ZNSt6vectorIS_INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EESaIS7_EED2Ev at Base 2.4.1
_ZNSt6vectorIS_IcSaIcEESaIS1_EE17_M_default_appendEm at Base 2.4.1
@@ -1793,19 +1787,30 @@ libbpp-seq.so.12 libbpp-seq12 #MINVER#
_ZNSt6vectorIS_IdSaIdEESaIS1_EED1Ev at Base 2.4.1
_ZNSt6vectorIS_IdSaIdEESaIS1_EED2Ev at Base 2.4.1
_ZNSt6vectorIbSaIbEE14_M_fill_insertESt13_Bit_iteratormb at Base 2.4.1
+ _ZNSt6vectorIbSaIbEEC1ERKS1_ at Base 2.4.1
+ _ZNSt6vectorIbSaIbEEC2ERKS1_ at Base 2.4.1
_ZNSt6vectorIcSaIcEE17_M_default_appendEm at Base 2.4.1
_ZNSt6vectorIdSaIdEE17_M_default_appendEm at Base 2.4.1
_ZNSt6vectorIdSaIdEE17_M_realloc_insertIJRKdEEEvN9__gnu_cxx17__normal_iteratorIPdS1_EEDpOT_ at Base 2.4.1
+ _ZNSt6vectorIdSaIdEED1Ev at Base 2.4.1
+ _ZNSt6vectorIdSaIdEED2Ev at Base 2.4.1
+ _ZNSt6vectorIiSaIiEE13_M_insert_auxIiEEvN9__gnu_cxx17__normal_iteratorIPiS1_EEOT_ at Base 2.4.1
_ZNSt6vectorIiSaIiEE14_M_fill_insertEN9__gnu_cxx17__normal_iteratorIPiS1_EEmRKi at Base 2.4.1
_ZNSt6vectorIiSaIiEE14_M_insert_rvalEN9__gnu_cxx17__normal_iteratorIPKiS1_EEOi at Base 2.4.1
_ZNSt6vectorIiSaIiEE17_M_default_appendEm at Base 2.4.1
_ZNSt6vectorIiSaIiEE17_M_realloc_insertIJRKiEEEvN9__gnu_cxx17__normal_iteratorIPiS1_EEDpOT_ at Base 2.4.1
_ZNSt6vectorIiSaIiEE17_M_realloc_insertIJiEEEvN9__gnu_cxx17__normal_iteratorIPiS1_EEDpOT_ at Base 2.4.1
_ZNSt6vectorIiSaIiEE6insertEN9__gnu_cxx17__normal_iteratorIPKiS1_EERS4_ at Base 2.4.1
+ _ZNSt6vectorIiSaIiEEC1ISt15_Deque_iteratorIiRiPiEvEET_S7_RKS0_ at Base 2.4.1
+ _ZNSt6vectorIiSaIiEEC2ISt15_Deque_iteratorIiRiPiEvEET_S7_RKS0_ at Base 2.4.1
+ _ZNSt6vectorIiSaIiEED1Ev at Base 2.4.1
+ _ZNSt6vectorIiSaIiEED2Ev at Base 2.4.1
_ZNSt6vectorImSaImEE17_M_default_appendEm at Base 2.4.1
_ZNSt6vectorImSaImEE17_M_realloc_insertIJRKmEEEvN9__gnu_cxx17__normal_iteratorIPmS1_EEDpOT_ at Base 2.4.1
_ZNSt6vectorImSaImEE17_M_realloc_insertIJmEEEvN9__gnu_cxx17__normal_iteratorIPmS1_EEDpOT_ at Base 2.4.1
_ZNSt6vectorImSaImEE9push_backERKm at Base 2.4.1
+ _ZNSt6vectorImSaImEED1Ev at Base 2.4.1
+ _ZNSt6vectorImSaImEED2Ev at Base 2.4.1
_ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEC1IS3_EEPKcRKS3_ at Base 2.4.1
_ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEC2IS3_EEPKcRKS3_ at Base 2.4.1
_ZNSt7__cxx1115basic_stringbufIcSt11char_traitsIcESaIcEED0Ev at Base 2.4.1
@@ -1830,42 +1835,14 @@ libbpp-seq.so.12 libbpp-seq12 #MINVER#
_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_mESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE24_M_get_insert_unique_posERS7_ at Base 2.4.1
_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_mESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS8_ERS7_ at Base 2.4.1
_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_mESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE4findERS7_ at Base 2.4.1
- _ZNSt8_Rb_treeIcSt4pairIKcdESt10_Select1stIS2_ESt4lessIcESaIS2_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJOcEESD_IJEEEEESt17_Rb_tree_iteratorIS2_ESt23_Rb_tree_const_iteratorIS2_EDpOT_ at Base 2.4.1
- _ZNSt8_Rb_treeIcSt4pairIKcdESt10_Select1stIS2_ESt4lessIcESaIS2_EE24_M_get_insert_unique_posERS1_ at Base 2.4.1
- _ZNSt8_Rb_treeIcSt4pairIKcdESt10_Select1stIS2_ESt4lessIcESaIS2_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS2_ERS1_ at Base 2.4.1
- _ZNSt8_Rb_treeIdSt4pairIKdmESt10_Select1stIS2_ESt4lessIdESaIS2_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJRS1_EESD_IJEEEEESt17_Rb_tree_iteratorIS2_ESt23_Rb_tree_const_iteratorIS2_EDpOT_ at Base 2.4.1
- _ZNSt8_Rb_treeIdSt4pairIKdmESt10_Select1stIS2_ESt4lessIdESaIS2_EE24_M_get_insert_unique_posERS1_ at Base 2.4.1
- _ZNSt8_Rb_treeIdSt4pairIKdmESt10_Select1stIS2_ESt4lessIdESaIS2_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS2_ERS1_ at Base 2.4.1
- _ZNSt8_Rb_treeIiSt4pairIKiSt3mapIidSt4lessIiESaIS0_IS1_dEEEESt10_Select1stIS8_ES4_SaIS8_EE24_M_get_insert_unique_posERS1_ at Base 2.4.1
- _ZNSt8_Rb_treeIiSt4pairIKiSt3mapIidSt4lessIiESaIS0_IS1_dEEEESt10_Select1stIS8_ES4_SaIS8_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS8_ERS1_ at Base 2.4.1
- _ZNSt8_Rb_treeIiSt4pairIKidESt10_Select1stIS2_ESt4lessIiESaIS2_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJOiEESD_IJEEEEESt17_Rb_tree_iteratorIS2_ESt23_Rb_tree_const_iteratorIS2_EDpOT_ at Base 2.4.1
- _ZNSt8_Rb_treeIiSt4pairIKidESt10_Select1stIS2_ESt4lessIiESaIS2_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJRS1_EESD_IJEEEEESt17_Rb_tree_iteratorIS2_ESt23_Rb_tree_const_iteratorIS2_EDpOT_ at Base 2.4.1
- _ZNSt8_Rb_treeIiSt4pairIKidESt10_Select1stIS2_ESt4lessIiESaIS2_EE24_M_get_insert_unique_posERS1_ at Base 2.4.1
- _ZNSt8_Rb_treeIiSt4pairIKidESt10_Select1stIS2_ESt4lessIiESaIS2_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS2_ERS1_ at Base 2.4.1
- _ZNSt8_Rb_treeIiSt4pairIKiiESt10_Select1stIS2_ESt4lessIiESaIS2_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJOiEESD_IJEEEEESt17_Rb_tree_iteratorIS2_ESt23_Rb_tree_const_iteratorIS2_EDpOT_ at Base 2.4.1
- _ZNSt8_Rb_treeIiSt4pairIKiiESt10_Select1stIS2_ESt4lessIiESaIS2_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJRS1_EESD_IJEEEEESt17_Rb_tree_iteratorIS2_ESt23_Rb_tree_const_iteratorIS2_EDpOT_ at Base 2.4.1
- _ZNSt8_Rb_treeIiSt4pairIKiiESt10_Select1stIS2_ESt4lessIiESaIS2_EE24_M_get_insert_unique_posERS1_ at Base 2.4.1
- _ZNSt8_Rb_treeIiSt4pairIKiiESt10_Select1stIS2_ESt4lessIiESaIS2_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS2_ERS1_ at Base 2.4.1
- _ZNSt8_Rb_treeIiSt4pairIKimESt10_Select1stIS2_ESt4lessIiESaIS2_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJOiEESD_IJEEEEESt17_Rb_tree_iteratorIS2_ESt23_Rb_tree_const_iteratorIS2_EDpOT_ at Base 2.4.1
- _ZNSt8_Rb_treeIiSt4pairIKimESt10_Select1stIS2_ESt4lessIiESaIS2_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJRS1_EESD_IJEEEEESt17_Rb_tree_iteratorIS2_ESt23_Rb_tree_const_iteratorIS2_EDpOT_ at Base 2.4.1
- _ZNSt8_Rb_treeIiSt4pairIKimESt10_Select1stIS2_ESt4lessIiESaIS2_EE24_M_get_insert_unique_posERS1_ at Base 2.4.1
- _ZNSt8_Rb_treeIiSt4pairIKimESt10_Select1stIS2_ESt4lessIiESaIS2_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS2_ERS1_ at Base 2.4.1
- _ZNSt8_Rb_treeImSt4pairIKmPN3bpp13SiteContainerEESt10_Select1stIS5_ESt4lessImESaIS5_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJRS1_EESG_IJEEEEESt17_Rb_tree_iteratorIS5_ESt23_Rb_tree_const_iteratorIS5_EDpOT_ at Base 2.4.1
- _ZNSt8_Rb_treeImSt4pairIKmPN3bpp13SiteContainerEESt10_Select1stIS5_ESt4lessImESaIS5_EE24_M_get_insert_unique_posERS1_ at Base 2.4.1
- _ZNSt8_Rb_treeImSt4pairIKmPN3bpp13SiteContainerEESt10_Select1stIS5_ESt4lessImESaIS5_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS5_ERS1_ at Base 2.4.1
- _ZNSt8_Rb_treeImSt4pairIKmmESt10_Select1stIS2_ESt4lessImESaIS2_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJOmEESD_IJEEEEESt17_Rb_tree_iteratorIS2_ESt23_Rb_tree_const_iteratorIS2_EDpOT_ at Base 2.4.1
- _ZNSt8_Rb_treeImSt4pairIKmmESt10_Select1stIS2_ESt4lessImESaIS2_EE24_M_get_insert_unique_posERS1_ at Base 2.4.1
- _ZNSt8_Rb_treeImSt4pairIKmmESt10_Select1stIS2_ESt4lessImESaIS2_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS2_ERS1_ at Base 2.4.1
_ZSt16__do_uninit_copyIN9__gnu_cxx17__normal_iteratorIPKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt6vectorIS7_SaIS7_EEEEPS7_ET0_T_SG_SF_ at Base 2.4.1
_ZSt16__do_uninit_copyIN9__gnu_cxx17__normal_iteratorIPKSt6vectorIcSaIcEES2_IS4_SaIS4_EEEEPS4_ET0_T_SC_SB_ at Base 2.4.1
_ZSt16__do_uninit_copyIN9__gnu_cxx17__normal_iteratorIPKSt6vectorIdSaIdEES2_IS4_SaIS4_EEEEPS4_ET0_T_SC_SB_ at Base 2.4.1
_ZSt16__do_uninit_copyIPKN3bpp13BasicSequenceEPS1_ET0_T_S6_S5_ at Base 2.4.1
_ZSt16__introsort_loopIN9__gnu_cxx17__normal_iteratorIPPN3bpp5RangeImEESt6vectorIS5_SaIS5_EEEElNS0_5__ops15_Iter_comp_iterINS2_10rangeComp_ImEEEEEvT_SG_T0_T1_ at Base 2.4.1
- _ZSt19piecewise_construct at Base 2.4.1
+ _ZSteqIcSt11char_traitsIcESaIcEEbRKNSt7__cxx1112basic_stringIT_T0_T1_EEPKS5_ at Base 2.4.1
_ZStplIcSt11char_traitsIcESaIcEENSt7__cxx1112basic_stringIT_T0_T1_EEOS8_S9_ at Base 2.4.1
_ZStplIcSt11char_traitsIcESaIcEENSt7__cxx1112basic_stringIT_T0_T1_EEPKS5_OS8_ at Base 2.4.1
- _ZStplIcSt11char_traitsIcESaIcEENSt7__cxx1112basic_stringIT_T0_T1_EEPKS5_RKS8_ at Base 2.4.1
- _ZStplIcSt11char_traitsIcESaIcEENSt7__cxx1112basic_stringIT_T0_T1_EERKS8_SA_ at Base 2.4.1
_ZTIN3bpp10BowkerTestE at Base 2.4.1
_ZTIN3bpp10IAlignmentE at Base 2.4.1
_ZTIN3bpp10IOSequenceE at Base 2.4.1
@@ -3338,6 +3315,5 @@ libbpp-seq.so.12 libbpp-seq12 #MINVER#
_ZTv0_n96_NK3bpp34EchinodermMitochondrialGeneticCode21getNumberOfStopCodonsEv at Base 2.4.1
_ZTv0_n96_NK3bpp34VertebrateMitochondrialGeneticCode21getNumberOfStopCodonsEv at Base 2.4.1
_ZTv0_n96_NK3bpp36InvertebrateMitochondrialGeneticCode21getNumberOfStopCodonsEv at Base 2.4.1
- _ZZNSt8__detail18__to_chars_10_implImEEvPcjT_E8__digits at Base 2.4.1
_ZeqRKN3bpp4SiteES2_ at Base 2.4.1
_ZltRKN3bpp4SiteES2_ at Base 2.4.1
=====================================
debian/patches/series
=====================================
@@ -1 +1,2 @@
unforce-cxxflags.patch
+spelling
=====================================
debian/patches/spelling
=====================================
@@ -0,0 +1,24 @@
+From: Michael R. Crusoe <crusoe at debian.org>
+Subject: fix a typo
+--- libbpp-seq.orig/src/Bpp/Seq/StringSequenceTools.cpp
++++ libbpp-seq/src/Bpp/Seq/StringSequenceTools.cpp
+@@ -332,7 +332,7 @@
+ }
+
+ if (u)
+- throw AlphabetException ("Sequence::getAlphabetFromSequence : Unknow character detected in specified sequence");
++ throw AlphabetException ("Sequence::getAlphabetFromSequence : Unknown character detected in specified sequence");
+ if (r && pd)
+ throw SequenceException ("Sequence::getAlphabetFromSequence : Both 'T' and 'U' in the same sequence!");
+ if (r && p)
+--- libbpp-seq.orig/src/Bpp/Seq/Io/Mase.h
++++ libbpp-seq/src/Bpp/Seq/Io/Mase.h
+@@ -229,7 +229,7 @@
+
+ const std::string getFormatDescription() const
+ {
+- return "Optional file comments (preceeded by ;;), sequence comments (preceeded by ;), sequence name, sequence";
++ return "Optional file comments (pprecede by ;;), sequence comments (pprecede by ;), sequence name, sequence";
+ }
+ /** @} */
+
View it on GitLab: https://salsa.debian.org/med-team/libbpp-seq/-/compare/4b5ff4c61513d4005c7e771916d406be2293bbc9...c14eebc8f844b8960d7ca971fef5dbdf1b99582c
--
View it on GitLab: https://salsa.debian.org/med-team/libbpp-seq/-/compare/4b5ff4c61513d4005c7e771916d406be2293bbc9...c14eebc8f844b8960d7ca971fef5dbdf1b99582c
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