[med-svn] [Git][med-team/augur][master] 4 commits: routine-update: New upstream version

[Étienne Mollier (@emollier)]

Étienne Mollier pushed to branch master at Debian Med / augur


Commits:
79ba2c7b by Étienne Mollier at 2023-08-13T16:07:03+02:00
routine-update: New upstream version

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2d29967b by Étienne Mollier at 2023-08-13T16:07:35+02:00
New upstream version 22.2.0
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b8c46f04 by Étienne Mollier at 2023-08-13T16:08:28+02:00
Update upstream source from tag 'upstream/22.2.0'

Update to upstream version '22.2.0'
with Debian dir 56e6c5418012d0bbb02e7e49d60b6032c2cb02d1
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aac580f9 by Étienne Mollier at 2023-08-13T16:12:48+02:00
routine-update: Ready to upload to unstable

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30 changed files:

- CHANGES.md
- augur/__version__.py
- augur/curate/__init__.py
- + augur/curate/titlecase.py
- augur/export_v1.py
- augur/export_v2.py
- augur/filter/include_exclude_rules.py
- debian/changelog
- docs/usage/cli/curate/index.rst
- + docs/usage/cli/curate/titlecase.rst
- setup.py
- tests/builds/zika.t
- + tests/functional/curate/cram/titlecase.t
- − tests/functional/export_v2.t
- + tests/functional/export_v2/cram/_setup.sh
- + tests/functional/export_v2/cram/augur-version-mismatch.t
- + tests/functional/export_v2/cram/auspice_config1.t
- + tests/functional/export_v2/cram/auspice_config2.t
- + tests/functional/export_v2/cram/auspice_config3.t
- + tests/functional/export_v2/cram/auspice_config4.t
- + tests/functional/export_v2/cram/branch_attrs.t
- + tests/functional/export_v2/cram/metadata-id-columns.t
- + tests/functional/export_v2/cram/metadata-with-accession.t
- + tests/functional/export_v2/cram/minimal.t
- tests/functional/export_v2/aa_muts_1.json → tests/functional/export_v2/data/aa_muts_1.json
- tests/functional/export_v2/auspice_config1.json → tests/functional/export_v2/data/auspice_config1.json
- tests/functional/export_v2/auspice_config2.json → tests/functional/export_v2/data/auspice_config2.json
- tests/functional/export_v2/auspice_config3.json → tests/functional/export_v2/data/auspice_config3.json
- tests/functional/export_v2/auspice_config4.json → tests/functional/export_v2/data/auspice_config4.json
- tests/functional/export_v2/branch-labels.json → tests/functional/export_v2/data/branch-labels.json


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/augur/-/compare/7c5d9526f23a255b553ff89c0a01d3cf935d27ca...aac580f9f9c6c5346ea5a27dcb3b1b41d4becda5

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View it on GitLab: https://salsa.debian.org/med-team/augur/-/compare/7c5d9526f23a255b553ff89c0a01d3cf935d27ca...aac580f9f9c6c5346ea5a27dcb3b1b41d4becda5
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