[med-svn] [Git][med-team/nipype][master] 4 commits: fix-privacy-breaches.patch: new: remove links from documentation.
Étienne Mollier (@emollier)
gitlab at salsa.debian.org
Fri Aug 18 10:21:33 BST 2023
Étienne Mollier pushed to branch master at Debian Med / nipype
Commits:
d9e439d3 by Étienne Mollier at 2023-08-18T09:27:10+02:00
fix-privacy-breaches.patch: new: remove links from documentation.
These links are automatically loaded upon reading the documentation,
due to being images or stylesheets.
- - - - -
135c951f by Étienne Mollier at 2023-08-18T09:28:23+02:00
d/t/control: autopkgtest depends on python3-all.
- - - - -
3e33d62b by Étienne Mollier at 2023-08-18T11:09:51+02:00
fix-privacy-breaches.patch: complements and commments.
Gbp-Dch: ignore
- - - - -
7804c292 by Étienne Mollier at 2023-08-18T11:10:23+02:00
ready to upload to unstable.
- - - - -
4 changed files:
- debian/changelog
- + debian/patches/fix-privacy-breaches.patch
- debian/patches/series
- debian/tests/control
Changes:
=====================================
debian/changelog
=====================================
@@ -1,18 +1,17 @@
-nipype (1.8.6-1) UNRELEASED; urgency=medium
+nipype (1.8.6-1) unstable; urgency=medium
- TODO: there remains one test error, but it doesn't look like it would stem
- from nipype, so #1042133 will be really closed only when the corresponding
- dependency will be identified and appropriately fixed.
-
- * Team upload.
* New upstream version 1.8.6 (Closes: #1042133)
* d/control: remove fsl-core from suggestions.
This package has been removed from unstable.
* 010*_*.patch: delete: applied upstream.
* deb_skip_doctest_pybids patch: refresh.
* d/control: add myself to uploaders.
+ * fix-privacy-breaches.patch: new: remove links from documentation.
+ These links are automatically loaded upon reading the documentation,
+ due to being images or stylesheets.
+ * d/t/control: autopkgtest depends on python3-all.
- -- Étienne Mollier <emollier at debian.org> Thu, 17 Aug 2023 19:03:21 +0200
+ -- Étienne Mollier <emollier at debian.org> Fri, 18 Aug 2023 09:29:10 +0200
nipype (1.8.5-3) unstable; urgency=medium
=====================================
debian/patches/fix-privacy-breaches.patch
=====================================
@@ -0,0 +1,103 @@
+Description: fix privacy breaches caused by autoloaded links.
+ There are a bunch of links landing in the html documentation which end up
+ automatically loaded upon mere reading of the local-only document. This
+ concerns images, scripts and stylesheets, among other things. These are
+ problematic for two reasons:
+ * they break when offline, or when the remote resource disappears;
+ * they reveal the remote resource someone is reading the documentation at a
+ given time.
+ .
+ Note that there are still some leftover links which still need to be
+ addressed, but I failed to identify where they stem from (basically this
+ concerns a bunch of scripts which are loaded from cloudflare, and also some
+ TeX html-ized resources).
+Author: Étienne Mollier <emollier at debian.org>
+Forwarded: not-needed
+Last-Update: 2023-08-18
+---
+This patch header follows DEP-3: http://dep.debian.net/deps/dep3/
+--- nipype.orig/README.rst
++++ nipype/README.rst
+@@ -2,41 +2,6 @@
+ NIPYPE: Neuroimaging in Python: Pipelines and Interfaces
+ ========================================================
+
+-.. image:: https://travis-ci.org/nipy/nipype.svg?branch=master
+- :target: https://travis-ci.org/nipy/nipype
+-
+-.. image:: https://circleci.com/gh/nipy/nipype/tree/master.svg?style=svg
+- :target: https://circleci.com/gh/nipy/nipype/tree/master
+-
+-.. image:: https://codecov.io/gh/nipy/nipype/branch/master/graph/badge.svg
+- :target: https://codecov.io/gh/nipy/nipype
+-
+-.. image:: https://api.codacy.com/project/badge/Grade/452bfc0d4de342c99b177d2c29abda7b
+- :target: https://www.codacy.com/app/nipype/nipype?utm_source=github.com&utm_medium=referral&utm_content=nipy/nipype&utm_campaign=Badge_Grade
+-
+-.. image:: https://img.shields.io/pypi/v/nipype.svg
+- :target: https://pypi.python.org/pypi/nipype/
+- :alt: Latest Version
+-
+-.. image:: https://img.shields.io/pypi/pyversions/nipype.svg
+- :target: https://pypi.python.org/pypi/nipype/
+- :alt: Supported Python versions
+-
+-.. image:: https://img.shields.io/pypi/status/nipype.svg
+- :target: https://pypi.python.org/pypi/nipype/
+- :alt: Development Status
+-
+-.. image:: https://img.shields.io/pypi/l/nipype.svg
+- :target: https://pypi.python.org/pypi/nipype/
+- :alt: License
+-
+-.. image:: https://img.shields.io/badge/gitter-join%20chat%20%E2%86%92-brightgreen.svg?style=flat
+- :target: http://gitter.im/nipy/nipype
+- :alt: Chat
+-
+-.. image:: https://zenodo.org/badge/DOI/10.5281/zenodo.596855.svg
+- :target: https://doi.org/10.5281/zenodo.596855
+- :alt: Citable DOI
+
+ Current neuroimaging software offer users an incredible opportunity to
+ analyze data using a variety of different algorithms. However, this has
+--- nipype.orig/doc/_templates/indexsidebar.html
++++ nipype/doc/_templates/indexsidebar.html
+@@ -6,9 +6,9 @@
+ <li>Code: <a href="http://github.com/nipy/nipype">Github</a> · <a href="http://github.com/nipy/nipype/issues">Bugs-Requests</a></li>
+ <li>Forum: <a href="https://neurostars.org/search?q=nipype">User</a> · <a href="https://mail.python.org/mailman/listinfo/neuroimaging">Developer</a></li>
+ <li>Chat: <a href="https://gitter.im/nipy/nipype">Gitter</a> · <a href="https://brainhack.slack.com/messages/C1FR76RAL">Slack</a></li>
+- <li><a href="about.html#funding">Funding</a> · <a href="http://nipy.org/software/license/index.html"><img src="https://img.shields.io/pypi/l/nipype.svg" alt="License"></a></li>
+- <li><a href="https://travis-ci.org/nipy/nipype"><img src="https://travis-ci.org/nipy/nipype.png?branch=master" alt="travis"></a> · <a href='https://codecov.io/gh/nipy/nipype'><img src='https://codecov.io/gh/nipy/nipype/branch/master/graph/badge.svg' alt='Coverage Status' /></a></li>
+- <a href='https://pypi.python.org/pypi/nipype/'><img src='https://img.shields.io/pypi/pyversions/nipype.svg' alt='Python Versions' /></a></li>
++ <li><a href="about.html#funding">Funding</a> · <a href="http://nipy.org/software/license/index.html">License</a></li>
++ <li><a href="https://travis-ci.org/nipy/nipype">Travis</a> · <a href='https://codecov.io/gh/nipy/nipype'>Coverage status</a></li>
++ <a href='https://pypi.python.org/pypi/nipype/'>Python versions</a></li>
+ </ul>
+
+ {% endblock %}
+--- nipype.orig/nipype/pipeline/engine/report_template.html
++++ nipype/nipype/pipeline/engine/report_template.html
+@@ -2,7 +2,7 @@
+ <html>
+ <head>
+ <meta http-equiv="Content-Type" content="text/html;charset=utf-8"/>
+- <link type="text/css" rel="stylesheet" href="http://mbostock.github.io/d3/talk/20111116/style.css"/>
++ <!--<link type="text/css" rel="stylesheet" href="http://mbostock.github.io/d3/talk/20111116/style.css"/>-->
+ <style type="text/css">
+
+ path.arc {
+--- nipype.orig/doc/_templates/layout.html
++++ nipype/doc/_templates/layout.html
+@@ -11,12 +11,6 @@
+ <!-- google analytics snippet was completely removed by Debian maintainers.
+ See http://lintian.debian.org/tags/privacy-breach-google-adsense.html
+ for more information -->
+-<script>
+- ((window.gitter = {}).chat = {}).options = {
+- room: 'nipy/nipype'
+- };
+-</script>
+-<script src="https://sidecar.gitter.im/dist/sidecar.v1.js" async defer></script>
+ {% endblock %}
+
+ {% block header %}
=====================================
debian/patches/series
=====================================
@@ -10,3 +10,4 @@ fix-transpose.patch
reproducible-build.patch
# we_do_not_distribute_looseversion_yet.patch
use_distutils_looseversion.patch
+fix-privacy-breaches.patch
=====================================
debian/tests/control
=====================================
@@ -1,3 +1,3 @@
Tests: run-unit-test
-Depends: @, at builddeps@, quilt
+Depends: @, at builddeps@, quilt, python3-all
Restrictions: allow-stderr
View it on GitLab: https://salsa.debian.org/med-team/nipype/-/compare/858eeeba34281e65df4df0b60e4e3529622da6ca...7804c292e12a9708615fbbd137f5d9ec97344b4c
--
View it on GitLab: https://salsa.debian.org/med-team/nipype/-/compare/858eeeba34281e65df4df0b60e4e3529622da6ca...7804c292e12a9708615fbbd137f5d9ec97344b4c
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