[med-svn] [Git][med-team/q2-alignment][master] 5 commits: New upstream version 2023.7.0
Étienne Mollier (@emollier)
gitlab at salsa.debian.org
Sat Aug 19 09:43:32 BST 2023
Étienne Mollier pushed to branch master at Debian Med / q2-alignment
Commits:
2c53b1ae by Étienne Mollier at 2023-08-19T10:37:54+02:00
New upstream version 2023.7.0
- - - - -
06ae8e77 by Étienne Mollier at 2023-08-19T10:37:54+02:00
routine-update: New upstream version
- - - - -
37dff30d by Étienne Mollier at 2023-08-19T10:37:55+02:00
Update upstream source from tag 'upstream/2023.7.0'
Update to upstream version '2023.7.0'
with Debian dir aaf460b351d79c195f5ada38426a3d9198922b78
- - - - -
4b36a8da by Étienne Mollier at 2023-08-19T10:41:55+02:00
d/clean: remove python egg info.
Closes: #1048491
- - - - -
187d93fa by Étienne Mollier at 2023-08-19T10:43:04+02:00
ready to upload to unstable.
- - - - -
17 changed files:
- + .github/workflows/ci-dev.yaml
- − .github/workflows/ci.yml
- + .github/workflows/join-release.yaml
- + .github/workflows/tag-release.yaml
- LICENSE
- ci/recipe/meta.yaml
- debian/changelog
- + debian/clean
- q2_alignment/__init__.py
- q2_alignment/_filter.py
- q2_alignment/_mafft.py
- q2_alignment/_version.py
- q2_alignment/plugin_setup.py
- q2_alignment/tests/__init__.py
- q2_alignment/tests/test_filter.py
- q2_alignment/tests/test_mafft.py
- setup.py
Changes:
=====================================
.github/workflows/ci-dev.yaml
=====================================
@@ -0,0 +1,12 @@
+# Example of workflow trigger for calling workflow (the client).
+name: ci-dev
+on:
+ pull_request:
+ branches: ["dev"]
+ push:
+ branches: ["dev"]
+jobs:
+ ci:
+ uses: qiime2/distributions/.github/workflows/lib-ci-dev.yaml at dev
+ with:
+ distro: core
\ No newline at end of file
=====================================
.github/workflows/ci.yml deleted
=====================================
@@ -1,55 +0,0 @@
-# This file is automatically generated by busywork.qiime2.org and
-# template-repos - any manual edits made to this file will be erased when
-# busywork performs maintenance updates.
-
-name: ci
-
-on:
- pull_request:
- push:
- branches:
- - master
-
-jobs:
- lint:
- runs-on: ubuntu-latest
- steps:
- - name: checkout source
- uses: actions/checkout at v2
-
- - name: set up python 3.8
- uses: actions/setup-python at v1
- with:
- python-version: 3.8
-
- - name: install dependencies
- run: python -m pip install --upgrade pip
-
- - name: lint
- run: |
- pip install -q https://github.com/qiime2/q2lint/archive/master.zip
- q2lint
- pip install -q flake8
- flake8
-
- build-and-test:
- needs: lint
- strategy:
- matrix:
- os: [ubuntu-latest, macos-latest]
- runs-on: ${{ matrix.os }}
- steps:
- - name: checkout source
- uses: actions/checkout at v2
- with:
- fetch-depth: 0
-
- - name: set up git repo for versioneer
- run: git fetch --depth=1 origin +refs/tags/*:refs/tags/*
-
- - uses: qiime2/action-library-packaging at alpha1
- with:
- package-name: q2-alignment
- build-target: dev
- additional-tests: py.test --pyargs q2_alignment
- library-token: ${{ secrets.LIBRARY_TOKEN }}
=====================================
.github/workflows/join-release.yaml
=====================================
@@ -0,0 +1,6 @@
+name: join-release
+on:
+ workflow_dispatch: {}
+jobs:
+ release:
+ uses: qiime2/distributions/.github/workflows/lib-join-release.yaml at dev
\ No newline at end of file
=====================================
.github/workflows/tag-release.yaml
=====================================
@@ -0,0 +1,7 @@
+name: tag-release
+on:
+ push:
+ branches: ["Release-*"]
+jobs:
+ tag:
+ uses: qiime2/distributions/.github/workflows/lib-tag-release.yaml at dev
\ No newline at end of file
=====================================
LICENSE
=====================================
@@ -1,6 +1,6 @@
BSD 3-Clause License
-Copyright (c) 2016-2022, QIIME 2 development team.
+Copyright (c) 2016-2023, QIIME 2 development team.
All rights reserved.
Redistribution and use in source and binary forms, with or without
=====================================
ci/recipe/meta.yaml
=====================================
@@ -33,6 +33,9 @@ test:
- q2_alignment
- qiime2.plugins.alignment
+ commands:
+ - py.test --pyargs q2_alignment
+
about:
home: https://qiime2.org
license: BSD-3-Clause
=====================================
debian/changelog
=====================================
@@ -1,3 +1,11 @@
+q2-alignment (2023.7.0-1) unstable; urgency=medium
+
+ * Team upload.
+ * New upstream version 2023.7.0
+ * d/clean: remove python egg info. (Closes: #1048491)
+
+ -- Étienne Mollier <emollier at debian.org> Sat, 19 Aug 2023 10:42:34 +0200
+
q2-alignment (2022.11.1-2) unstable; urgency=medium
* Team upload
=====================================
debian/clean
=====================================
@@ -0,0 +1 @@
+q2_alignment.egg-info/
=====================================
q2_alignment/__init__.py
=====================================
@@ -1,5 +1,5 @@
# ----------------------------------------------------------------------------
-# Copyright (c) 2016-2022, QIIME 2 development team.
+# Copyright (c) 2016-2023, QIIME 2 development team.
#
# Distributed under the terms of the Modified BSD License.
#
=====================================
q2_alignment/_filter.py
=====================================
@@ -1,5 +1,5 @@
# ----------------------------------------------------------------------------
-# Copyright (c) 2016-2022, QIIME 2 development team.
+# Copyright (c) 2016-2023, QIIME 2 development team.
#
# Distributed under the terms of the Modified BSD License.
#
=====================================
q2_alignment/_mafft.py
=====================================
@@ -1,5 +1,5 @@
# ----------------------------------------------------------------------------
-# Copyright (c) 2016-2022, QIIME 2 development team.
+# Copyright (c) 2016-2023, QIIME 2 development team.
#
# Distributed under the terms of the Modified BSD License.
#
=====================================
q2_alignment/_version.py
=====================================
@@ -23,9 +23,9 @@ def get_keywords():
# setup.py/versioneer.py will grep for the variable names, so they must
# each be defined on a line of their own. _version.py will just call
# get_keywords().
- git_refnames = " (HEAD -> master, tag: 2022.11.1)"
- git_full = "6bfd79f154b9d17415247dc17d2cc9431be4b326"
- git_date = "2022-12-21 21:44:37 +0000"
+ git_refnames = " (tag: 2023.7.0, Release-2023.7)"
+ git_full = "321c0997a84408a93acdbcaa3d2ab712e933c4c3"
+ git_date = "2023-08-17 18:33:20 +0000"
keywords = {"refnames": git_refnames, "full": git_full, "date": git_date}
return keywords
=====================================
q2_alignment/plugin_setup.py
=====================================
@@ -1,5 +1,5 @@
# ----------------------------------------------------------------------------
-# Copyright (c) 2016-2022, QIIME 2 development team.
+# Copyright (c) 2016-2023, QIIME 2 development team.
#
# Distributed under the terms of the Modified BSD License.
#
=====================================
q2_alignment/tests/__init__.py
=====================================
@@ -1,5 +1,5 @@
# ----------------------------------------------------------------------------
-# Copyright (c) 2016-2022, QIIME 2 development team.
+# Copyright (c) 2016-2023, QIIME 2 development team.
#
# Distributed under the terms of the Modified BSD License.
#
=====================================
q2_alignment/tests/test_filter.py
=====================================
@@ -1,5 +1,5 @@
# ----------------------------------------------------------------------------
-# Copyright (c) 2016-2022, QIIME 2 development team.
+# Copyright (c) 2016-2023, QIIME 2 development team.
#
# Distributed under the terms of the Modified BSD License.
#
=====================================
q2_alignment/tests/test_mafft.py
=====================================
@@ -1,5 +1,5 @@
# ----------------------------------------------------------------------------
-# Copyright (c) 2016-2022, QIIME 2 development team.
+# Copyright (c) 2016-2023, QIIME 2 development team.
#
# Distributed under the terms of the Modified BSD License.
#
=====================================
setup.py
=====================================
@@ -1,5 +1,5 @@
# ----------------------------------------------------------------------------
-# Copyright (c) 2016-2022, QIIME 2 development team.
+# Copyright (c) 2016-2023, QIIME 2 development team.
#
# Distributed under the terms of the Modified BSD License.
#
View it on GitLab: https://salsa.debian.org/med-team/q2-alignment/-/compare/6ac8e715f1982514c26cc20c881e4b1780d441d9...187d93fa92357d0cd4b6c1aa75e88ad48d15cf1f
--
View it on GitLab: https://salsa.debian.org/med-team/q2-alignment/-/compare/6ac8e715f1982514c26cc20c881e4b1780d441d9...187d93fa92357d0cd4b6c1aa75e88ad48d15cf1f
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