[med-svn] [Git][med-team/community/helper-scripts][master] automatic update

Andreas Tille (@tille) gitlab at salsa.debian.org
Sun Dec 3 01:43:54 GMT 2023



Andreas Tille pushed to branch master at Debian Med / community / helper-scripts


Commits:
e4776724 by Andreas Tille at 2023-12-03T01:43:45+00:00
automatic update

- - - - -


4 changed files:

- debian-med-tests.txt
- debian-science-tests.txt
- outdated_med-packages.txt
- python-team-tests.txt


Changes:

=====================================
debian-med-tests.txt
=====================================
@@ -1,11 +1,11 @@
-Last-Update: Sat, 02 Dec 2023 13:42:04 +0000
+Last-Update: Sun, 03 Dec 2023 01:42:04 +0000
 
  Source                        | Vote   | Tasks                                      |                                 Tags                                 
 -------------------------------+--------+--------------------------------------------+----------------------------------------------------------------------
  amide                         |     25 | {imaging}                                  | 
  dicomscope                    |     20 | {imaging}                                  | 
  gnumed-server                 |     13 | {covid-19,practice}                        | 
- oscar                         |     10 | {tools,data,practice}                      | 
+ oscar                         |     10 | {data,tools,practice}                      | 
  orthanc-gdcm                  |      9 | {imaging}                                  | 
  mrtrix3                       |      8 | {imaging}                                  | 
  biojava-live                  |      7 | {bio-dev}                                  | 
@@ -16,46 +16,46 @@ Last-Update: Sat, 02 Dec 2023 13:42:04 +0000
  bart-view                     |      5 | {imaging}                                  | 
  libminc                       |      5 | {imaging-dev}                              | 
  mia                           |      5 | {imaging}                                  | 
- king                          |      4 | {imaging,typesetting}                      | 
+ king                          |      4 | {typesetting,imaging}                      | 
  pixelmed                      |      4 | {imaging}                                  | 
- treeview                      |      4 | {bio-phylogeny,bio}                        | 
+ treeview                      |      4 | {bio,bio-phylogeny}                        | 
  biojava6-live                 |      3 | {bio-dev}                                  | 
- bio-tradis                    |      3 | {bio,bio-dev}                              | 
- dextractor                    |      3 | {bio,covid-19}                             | 
+ bio-tradis                    |      3 | {bio-dev,bio}                              | 
+ dextractor                    |      3 | {covid-19,bio}                             | 
  getdata                       |      3 | {bio}                                      | 
  ghmm                          |      3 | {bio}                                      | 
  jebl2                         |      3 | {bio-dev}                                  | 
  librg-utils-perl              |      3 | {bio}                                      | 
- melting                       |      3 | {bio,cloud}                                | 
+ melting                       |      3 | {cloud,bio}                                | 
  obitools                      |      3 | {bio}                                      | 
  piler                         |      3 | {bio}                                      | 
  staden                        |      3 | {bio}                                      | 
- tophat-recondition            |      3 | {bio,covid-19}                             | 
+ tophat-recondition            |      3 | {covid-19,bio}                             | 
  bitseq                        |      2 | {bio}                                      | 
  libbio-mage-utils-perl        |      2 | {bio-dev}                                  | 
  libdivsufsort                 |      2 | {bio-dev}                                  | 
  mhap                          |      2 | {bio-ngs,bio}                              | 
  microbegps                    |      2 | {bio}                                      | 
  phyutility                    |      2 | {cloud,bio}                                | 
- proalign                      |      2 | {bio-phylogeny,bio}                        | 
+ proalign                      |      2 | {bio,bio-phylogeny}                        | 
  pymia                         |      2 | {imaging-dev}                              | 
  saint                         |      2 | {bio}                                      | 
- sibsim4                       |      2 | {bio,cloud}                                | 
+ sibsim4                       |      2 | {cloud,bio}                                | 
  spread-phy                    |      2 | {bio-phylogeny,bio}                        | 
- thesias                       |      2 | {covid-19,bio}                             | 
- arden                         |      1 | {bio,cloud}                                | 
+ thesias                       |      2 | {bio,covid-19}                             | 
+ arden                         |      1 | {cloud,bio}                                | 
  assemblytics                  |      1 | {bio}                                      | 
  beast-mcmc                    |      1 | {bio-phylogeny,bio}                        | 
  blimps                        |      1 | {bio}                                      | 
  brig                          |      1 | {bio}                                      | 
  btllib                        |      1 | {bio}                                      | 
- cat-bat                       |      1 | {covid-19,bio}                             | 
+ cat-bat                       |      1 | {bio,covid-19}                             | 
  clonalframeml                 |      1 | {bio,covid-19}                             | 
  clonalorigin                  |      1 | {bio}                                      | 
  cutesv                        |      1 | {bio}                                      | 
  embassy-domainatrix           |      1 | {bio,cloud}                                | 
  embassy-domalign              |      1 | {bio,cloud}                                | 
- embassy-domsearch             |      1 | {bio,cloud}                                | 
+ embassy-domsearch             |      1 | {cloud,bio}                                | 
  fastml                        |      1 | {bio}                                      | 
  hinge                         |      1 | {bio}                                      | 
  insighttoolkit5               |      1 | {imaging-dev}                              | 
@@ -75,10 +75,10 @@ Last-Update: Sat, 02 Dec 2023 13:42:04 +0000
  megan-ce                      |      1 | {bio}                                      | 
  metaphlan                     |      1 | {bio}                                      | 
  ncbi-igblast                  |      1 | {bio}                                      | 
- pigx-rnaseq                   |      1 | {covid-19,bio}                             | 
+ pigx-rnaseq                   |      1 | {bio,covid-19}                             | 
  pique                         |      1 | {bio}                                      | 
  placnet                       |      1 | {bio}                                      | 
- plasmidid                     |      1 | {bio,covid-19}                             | 
+ plasmidid                     |      1 | {covid-19,bio}                             | 
  plasmidseeker                 |      1 | {bio}                                      | 
  provean                       |      1 | {bio}                                      | 
  pscan-chip                    |      1 | {bio}                                      | 
@@ -106,10 +106,10 @@ Last-Update: Sat, 02 Dec 2023 13:42:04 +0000
  terraphast                    |      1 | {bio}                                      | 
  trace2dbest                   |      1 | {bio}                                      | 
  tracetuner                    |      1 | {bio}                                      | 
- vienna-rna                    |      1 | {bio,covid-19}                             | 
+ vienna-rna                    |      1 | {covid-19,bio}                             | 
  xpore                         |      1 | {bio}                                      | 
- acedb                         |      0 | {cloud,bio}                                | 
- anfo                          |      0 | {cloud,bio}                                | 
+ acedb                         |      0 | {bio,cloud}                                | 
+ anfo                          |      0 | {bio,cloud}                                | 
  bambamc                       |      0 | {bio-dev}                                  | 
  biosyntax                     |      0 | {bio}                                      | 
  btllib                        |      0 | {bio-dev}                                  | 
@@ -117,13 +117,13 @@ Last-Update: Sat, 02 Dec 2023 13:42:04 +0000
  capsule-maven-nextflow        |      0 | {bio-dev}                                  | 
  cmtk                          |      0 | {imaging}                                  | 
  ctn                           |      0 | {imaging-dev}                              | 
- cufflinks                     |      0 | {cloud,bio}                                | 
+ cufflinks                     |      0 | {bio,cloud}                                | 
  eegdev                        |      0 | {imaging-dev}                              | 
  elastix                       |      0 | {imaging}                                  | 
  emboss-explorer               |      0 | {bio}                                      | 
  fis-gtm                       |      0 | {his}                                      | 
  gatk-bwamem                   |      0 | {bio-dev}                                  | 
- htscodecs                     |      0 | {bio-dev,covid-19}                         | 
+ htscodecs                     |      0 | {covid-19,bio-dev}                         | 
  libbioparser-dev              |      0 | {bio-dev}                                  | 
  libbiosoup-dev                |      0 | {bio-dev}                                  | 
  libbpp-core                   |      0 | {bio-dev}                                  | 
@@ -156,9 +156,9 @@ Last-Update: Sat, 02 Dec 2023 13:42:04 +0000
  papyrus                       |      0 | {imaging-dev}                              | 
  pbcopper                      |      0 | {bio-dev}                                  | 
  pbseqlib                      |      0 | {bio-dev}                                  | 
- pplacer                       |      0 | {bio-phylogeny,covid-19,bio}               | 
+ pplacer                       |      0 | {bio,covid-19,bio-phylogeny}               | 
  python-seqcluster             |      0 | {bio}                                      | 
- python-seqcluster             |      0 | {covid-19,bio-dev}                         | 
+ python-seqcluster             |      0 | {bio-dev,covid-19}                         | 
  resfinder-db                  |      0 | {bio}                                      | 
  savvy                         |      0 | {bio-dev}                                  | 
  sbmltoolbox                   |      0 | {bio-dev}                                  | 
@@ -166,12 +166,12 @@ Last-Update: Sat, 02 Dec 2023 13:42:04 +0000
  smrtanalysis                  |      0 | {covid-19,bio}                             | 
  srf                           |      0 | {bio-dev}                                  | 
  terraphast                    |      0 | {bio-dev}                                  | 
- tipp                          |      0 | {covid-19,bio}                             | 
+ tipp                          |      0 | {bio,covid-19}                             | 
  varscan                       |      0 | {covid-19,bio}                             | 
  xdffileio                     |      0 | {imaging-dev}                              | 
  xxsds-dynamic                 |      0 | {bio-dev}                                  | 
  gatk-fermilite                |     -1 | {bio-dev}                                  | 
- libmaus2                      |     -1 | {bio-dev,covid-19}                         | 
+ libmaus2                      |     -1 | {covid-19,bio-dev}                         | 
  mssstest                      |     -1 | {tools}                                    | 
 (198 rows)
 


=====================================
debian-science-tests.txt
=====================================
@@ -1,26 +1,26 @@
-Last-Update: Sat, 02 Dec 2023 13:42:08 +0000
+Last-Update: Sun, 03 Dec 2023 01:42:09 +0000
 
        Source                              | Vote   |             Tasks                                                   |                                Tags                                
 -------------------------------------------+--------+---------------------------------------------------------------------+--------------------------------------------------------------------
- sympy                                     |   4614 | {physics,nanoscale-physics}                                         | 
+ sympy                                     |   4614 | {nanoscale-physics,physics}                                         | 
  gts                                       |   4380 | {viewing}                                                           | 
  nltk                                      |   2399 | {linguistics}                                                       | 
  opencascade                               |    473 | {simulations}                                                       | 
  armadillo                                 |    176 | {mathematics-dev}                                                   | 
- suitesparse                               |    175 | {mathematics-dev,numericalcomputation}                              | 
+ suitesparse                               |    175 | {numericalcomputation,mathematics-dev}                              | 
  python-pyqtgraph                          |    169 | {viewing}                                                           | 
  spacenavd                                 |    156 | {tools}                                                             | 
  cypari2                                   |    137 | {mathematics-dev}                                                   | 
  arpack                                    |    116 | {mathematics-dev}                                                   | 
  atlas                                     |     89 | {mathematics-dev}                                                   | 
- fftw                                      |     39 | {mathematics-dev,meteorology-dev,physics-dev}                       | 
+ fftw                                      |     39 | {meteorology-dev,mathematics-dev,physics-dev}                       | 
  imview                                    |     39 | {viewing}                                                           | 
  scalapack                                 |     34 | {nanoscale-physics-dev}                                             | 
  pyzo                                      |     33 | {numericalcomputation}                                              | 
  ntl                                       |     31 | {mathematics-dev}                                                   | 
  arduino-mk                                |     30 | {robotics}                                                          | 
  flintqs                                   |     25 | {mathematics}                                                       | 
- flann                                     |     24 | {engineering-dev,mathematics-dev}                                   | 
+ flann                                     |     24 | {mathematics-dev,engineering-dev}                                   | 
  ppl                                       |     22 | {numericalcomputation}                                              | 
  bossa                                     |     20 | {devices}                                                           | 
  libmatio                                  |     20 | {mathematics-dev}                                                   | 
@@ -30,40 +30,40 @@ Last-Update: Sat, 02 Dec 2023 13:42:08 +0000
  dune-uggrid                               |     18 | {mathematics-dev}                                                   | 
  sketch                                    |     18 | {typesetting}                                                       | 
  feedgnuplot                               |     17 | {viewing}                                                           | 
- guiqwt                                    |     17 | {numericalcomputation,viewing}                                      | 
+ guiqwt                                    |     17 | {viewing,numericalcomputation}                                      | 
  setzer                                    |     17 | {typesetting}                                                       | 
- fftw                                      |     16 | {meteorology-dev,physics-dev,mathematics-dev}                       | 
+ fftw                                      |     16 | {physics-dev,meteorology-dev,mathematics-dev}                       | 
  gts                                       |     15 | {viewing-dev}                                                       | 
  matlab-support                            |     15 | {numericalcomputation,mathematics}                                  | 
  picosat                                   |     15 | {logic}                                                             | 
- rubiks                                    |     15 | {geometry,mathematics}                                              | 
+ rubiks                                    |     15 | {mathematics,geometry}                                              | 
  libitpp                                   |     11 | {engineering-dev,mathematics-dev}                                   | 
- libvigraimpex                             |     11 | {machine-learning,imageanalysis-dev}                                | 
+ libvigraimpex                             |     11 | {imageanalysis-dev,machine-learning}                                | 
  alberta                                   |     10 | {engineering-dev}                                                   | 
  amp                                       |     10 | {chemistry}                                                         | 
  cliquer                                   |     10 | {mathematics-dev}                                                   | 
  lrcalc                                    |     10 | {mathematics-dev}                                                   | 
  lxi-tools                                 |     10 | {engineering,dataacquisition}                                       | 
- persalys                                  |     10 | {mathematics,engineering,statistics}                                | 
+ persalys                                  |     10 | {statistics,mathematics,engineering}                                | 
  ros-ros-environment                       |     10 | {robotics-dev}                                                      | 
  vitables                                  |     10 | {numericalcomputation}                                              | 
- coinor-symphony                           |      9 | {mathematics,numericalcomputation,logic}                            | 
+ coinor-symphony                           |      9 | {logic,mathematics,numericalcomputation}                            | 
  mathgl                                    |      9 | {viewing}                                                           | 
  muparser                                  |      9 | {mathematics-dev}                                                   | 
  pcl                                       |      9 | {robotics-dev}                                                      | 
  ros-vcstool                               |      9 | {robotics-dev}                                                      | 
  urdfdom-headers                           |      9 | {robotics-dev}                                                      | 
- debian-science                            |      8 | {economics,nanoscale-physics,machine-learning,physics}              | 
+ debian-science                            |      8 | {nanoscale-physics,physics,economics,machine-learning}              | 
  feff85exafs                               |      8 | {chemistry}                                                         | 
  ros-rosconsole                            |      8 | {robotics-dev}                                                      | 
  teem                                      |      8 | {imageanalysis}                                                     | 
- debian-science                            |      7 | {physics,machine-learning,mathematics,nanoscale-physics,economics}  | 
+ debian-science                            |      7 | {mathematics,economics,physics,machine-learning,nanoscale-physics}  | 
  dune-istl                                 |      7 | {mathematics-dev}                                                   | 
- etsf-io                                   |      7 | {physics,nanoscale-physics}                                         | 
+ etsf-io                                   |      7 | {nanoscale-physics,physics}                                         | 
  geg                                       |      7 | {viewing}                                                           | 
  libhomfly                                 |      7 | {mathematics-dev}                                                   | 
- persalys                                  |      7 | {mathematics,engineering,statistics}                                | 
- debian-science                            |      6 | {physics,nanoscale-physics,statistics,economics}                    | 
+ persalys                                  |      7 | {engineering,mathematics,statistics}                                | 
+ debian-science                            |      6 | {economics,physics,statistics,nanoscale-physics}                    | 
  dxsamples                                 |      6 | {nanoscale-physics}                                                 | 
  form                                      |      6 | {mathematics}                                                       | 
  gf2x                                      |      6 | {mathematics-dev}                                                   | 
@@ -85,7 +85,7 @@ Last-Update: Sat, 02 Dec 2023 13:42:08 +0000
  opencascade                               |      5 | {simulations}                                                       | 
  rheolef                                   |      5 | {mathematics}                                                       | 
  sdpb                                      |      5 | {highenergy-physics,numericalcomputation}                           | 
- toulbar2                                  |      5 | {mathematics,numericalcomputation,logic,physics}                    | 
+ toulbar2                                  |      5 | {logic,mathematics,physics,numericalcomputation}                    | 
  apertium-streamparser                     |      4 | {linguistics}                                                       | 
  ipe-tools                                 |      4 | {typesetting}                                                       | 
  libcgns                                   |      4 | {engineering-dev}                                                   | 
@@ -94,7 +94,7 @@ Last-Update: Sat, 02 Dec 2023 13:42:08 +0000
  lrcalc                                    |      4 | {mathematics}                                                       | 
  metis-edf                                 |      4 | {numericalcomputation,engineering}                                  | 
  openigtlink                               |      4 | {robotics-dev}                                                      | 
- python-escript                            |      4 | {engineering,numericalcomputation,simulations}                      | 
+ python-escript                            |      4 | {simulations,engineering,numericalcomputation}                      | 
  qd                                        |      4 | {mathematics-dev}                                                   | 
  syrthes                                   |      4 | {engineering}                                                       | 
  toontag                                   |      4 | {numericalcomputation}                                              | 
@@ -120,7 +120,7 @@ Last-Update: Sat, 02 Dec 2023 13:42:08 +0000
  clhep                                     |      2 | {highenergy-physics-dev}                                            | 
  clipper                                   |      2 | {nanoscale-physics-dev}                                             | 
  coda                                      |      2 | {meteorology-dev}                                                   | 
- code-saturne                              |      2 | {mathematics-dev,engineering-dev}                                   | 
+ code-saturne                              |      2 | {engineering-dev,mathematics-dev}                                   | 
  coinor-bonmin                             |      2 | {mathematics}                                                       | 
  debian-science                            |      2 | {physics}                                                           | 
  debian-science                            |      2 | {neuroscience-cognitive,machine-learning}                           | 
@@ -131,7 +131,7 @@ Last-Update: Sat, 02 Dec 2023 13:42:08 +0000
  libcgns                                   |      2 | {engineering}                                                       | 
  liblbfgs                                  |      2 | {mathematics-dev}                                                   | 
  liblxi                                    |      2 | {engineering-dev,dataacquisition-dev}                               | 
- libvigraimpex                             |      2 | {machine-learning,imageanalysis-dev}                                | 
+ libvigraimpex                             |      2 | {imageanalysis-dev,machine-learning}                                | 
  looptools                                 |      2 | {highenergy-physics}                                                | 
  looptools                                 |      2 | {highenergy-physics-dev}                                            | 
  mmdb                                      |      2 | {nanoscale-physics-dev,highenergy-physics-dev}                      | 
@@ -146,7 +146,7 @@ Last-Update: Sat, 02 Dec 2023 13:42:08 +0000
  ros-opencv-apps                           |      2 | {robotics}                                                          | 
  sac2mseed                                 |      2 | {geography}                                                         | 
  sparskit                                  |      2 | {mathematics-dev}                                                   | 
- spfft                                     |      2 | {physics-dev,meteorology-dev,nanoscale-physics-dev,mathematics-dev} | 
+ spfft                                     |      2 | {physics-dev,mathematics-dev,nanoscale-physics-dev,meteorology-dev} | 
  ufo-core                                  |      2 | {nanoscale-physics-dev}                                             | 
  x13as                                     |      2 | {economics}                                                         | 
  apache-opennlp                            |      1 | {linguistics}                                                       | 
@@ -159,23 +159,23 @@ Last-Update: Sat, 02 Dec 2023 13:42:08 +0000
  dxflib                                    |      1 | {engineering-dev}                                                   | 
  frog                                      |      1 | {linguistics}                                                       | 
  frogdata                                  |      1 | {linguistics}                                                       | 
- hepmc3                                    |      1 | {highenergy-physics-dev,nanoscale-physics-dev}                      | 
+ hepmc3                                    |      1 | {nanoscale-physics-dev,highenergy-physics-dev}                      | 
  jhdf                                      |      1 | {engineering-dev}                                                   | 
  libdogleg                                 |      1 | {mathematics-dev}                                                   | 
  libgtkdatabox                             |      1 | {engineering-dev,viewing-dev}                                       | 
  looptools                                 |      1 | {highenergy-physics-dev}                                            | 
  meshsdfilter                              |      1 | {mathematics-dev}                                                   | 
  mrmpi                                     |      1 | {tools}                                                             | 
- ncrystal                                  |      1 | {nanoscale-physics-dev,highenergy-physics-dev}                      | 
+ ncrystal                                  |      1 | {highenergy-physics-dev,nanoscale-physics-dev}                      | 
  openctm                                   |      1 | {physics-dev}                                                       | 
  openmesh                                  |      1 | {mathematics-dev}                                                   | 
  ortools                                   |      1 | {mathematics-dev}                                                   | 
  psurface                                  |      1 | {numericalcomputation}                                              | 
  python-opcodes                            |      1 | {tools}                                                             | 
  sardana                                   |      1 | {dataacquisition}                                                   | 
- schroedinger-coordgenlibs                 |      1 | {chemistry,nanoscale-physics-dev}                                   | 
+ schroedinger-coordgenlibs                 |      1 | {nanoscale-physics-dev,chemistry}                                   | 
  ssm                                       |      1 | {nanoscale-physics-dev}                                             | 
- trilinos                                  |      1 | {mathematics-dev,engineering-dev,physics-dev}                       | 
+ trilinos                                  |      1 | {physics-dev,mathematics-dev,engineering-dev}                       | 
  vdt                                       |      1 | {mathematics-dev}                                                   | 
  veccore                                   |      1 | {mathematics-dev}                                                   | 
  vlfeat                                    |      1 | {imageanalysis-dev}                                                 | 
@@ -191,7 +191,7 @@ Last-Update: Sat, 02 Dec 2023 13:42:08 +0000
  apertium-urd                              |      0 | {linguistics}                                                       | 
  apertium-urd-hin                          |      0 | {linguistics}                                                       | 
  asl                                       |      0 | {physics-dev}                                                       | 
- calculix-ccx-doc                          |      0 | {numericalcomputation,simulations,engineering}                      | 
+ calculix-ccx-doc                          |      0 | {numericalcomputation,engineering,simulations}                      | 
  calculix-ccx-test                         |      0 | {engineering,simulations,numericalcomputation}                      | 
  ckon                                      |      0 | {highenergy-physics-dev}                                            | 
  clhep                                     |      0 | {highenergy-physics-dev}                                            | 
@@ -226,7 +226,7 @@ Last-Update: Sat, 02 Dec 2023 13:42:08 +0000
  ompl                                      |      0 | {robotics}                                                          | 
  opengv                                    |      0 | {geometry}                                                          | 
  python-aws-xray-sdk                       |      0 | {dataacquisition-dev}                                               | 
- python-escript                            |      0 | {engineering,simulations,numericalcomputation}                      | 
+ python-escript                            |      0 | {simulations,engineering,numericalcomputation}                      | 
  qrupdate                                  |      0 | {mathematics-dev}                                                   | 
  ros-collada-urdf                          |      0 | {robotics}                                                          | 
  ros-metapackages                          |      0 | {robotics-dev}                                                      | 


=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.

=====================================
python-team-tests.txt
=====================================
@@ -1,4 +1,4 @@
-Last-Update: Sat, 02 Dec 2023 13:42:12 +0000
+Last-Update: Sun, 03 Dec 2023 01:42:13 +0000
 
      Source                             | Vote   |                          Tags                          
 ----------------------------------------+--------+--------------------------------------------------------



View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/e4776724ae36a60a43c00a535dc69b301933afa4

-- 
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