[med-svn] [Git][med-team/ivar][master] 3 commits: d/clean: new: clean build artifacts.

[Étienne Mollier (@emollier)]

Étienne Mollier pushed to branch master at Debian Med / ivar


Commits:
d12f521b by Étienne Mollier at 2023-12-05T16:05:35+01:00
d/clean: new: clean build artifacts.

Closes: #1047333

- - - - -
6b4e71c9 by Étienne Mollier at 2023-12-05T16:06:45+01:00
d/rules: remove dh_auto_clean override.

Now that d/clean has an up-to-date list, the manual `rm` command is
not needed anymore.

- - - - -
7f9e51e2 by Étienne Mollier at 2023-12-05T16:13:20+01:00
ready to upload to unstable.

- - - - -


3 changed files:

- debian/changelog
- + debian/clean
- debian/rules


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,12 @@
+ivar (1.4.2+dfsg-3) unstable; urgency=medium
+
+  * d/clean: new: clean build artifacts. (Closes: #1047333)
+  * d/rules: remove dh_auto_clean override.
+    Now that d/clean has an up-to-date list, the manual `rm` command is
+    not needed anymore.
+
+ -- Étienne Mollier <emollier at debian.org>  Tue, 05 Dec 2023 16:07:32 +0100
+
 ivar (1.4.2+dfsg-2) unstable; urgency=medium
 
   [ Adrian Bunk ]


=====================================
debian/clean
=====================================
@@ -0,0 +1,33 @@
+data/db/test_ref.fa.fai
+data/test.gap.fa
+data/test.gap.qual.txt
+data/test.indel*.tsv
+data/test.masked_primer_indices.txt
+data/test.trimmed.masked.bam
+data/test.trimmed.masked.bam.bai
+data/test.trimmed.sorted.bam.bai
+data/test.unmapped.sorted.bam.bai
+data/trim_isize.bam
+src/ivar
+src/*.o
+tests/check_allele_depth
+tests/check_amplicon_search
+tests/check_common_variants
+tests/check_consensus
+tests/check_consensus_min_depth
+tests/check_consensus_min_insert_threshold
+tests/check_consensus_seq_id
+tests/check_consensus_threshold
+tests/check_getmasked
+tests/check_interval_tree
+tests/check_isize_trim
+tests/check_isize_trim
+tests/check_primer_bed
+tests/check_primer_trim
+tests/check_primer_trim_edge_cases
+tests/check_quality_trim
+tests/check_removereads
+tests/check_trim
+tests/check_unpaired_trim
+tests/check_variants
+tests/*.o


=====================================
debian/rules
=====================================
@@ -20,6 +20,3 @@ endif
 #        file in the installation tree; could be a target for find…)
 execute_before_dh_auto_install:
 	chmod -x $(CURDIR)/data/primer_pair_test/test_primer_pair.bed
-
-override_dh_auto_clean:
-	rm -f data/db/test_ref.fa.fai data/test.gap.fa data/test.gap.qual.txt data/test.indel.tsv data/test.masked_primer_indices.txt data/test.trimmed.masked.bam data/test.trimmed.masked.bam.bai data/test.trimmed.sorted.bam.bai data/test.unmapped.sorted.bam.bai



View it on GitLab: https://salsa.debian.org/med-team/ivar/-/compare/d6bba35fa06ab3f3c39b4674fc6d53641e9c04da...7f9e51e273e7c7dfc476cdb9aa804e7d00359bee

-- 
View it on GitLab: https://salsa.debian.org/med-team/ivar/-/compare/d6bba35fa06ab3f3c39b4674fc6d53641e9c04da...7f9e51e273e7c7dfc476cdb9aa804e7d00359bee
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