[med-svn] [Git][med-team/gmap][master] 7 commits: routine-update: New upstream version

[Étienne Mollier (@emollier)]

Étienne Mollier pushed to branch master at Debian Med / gmap


Commits:
4337b870 by Étienne Mollier at 2023-12-08T10:50:41+01:00
routine-update: New upstream version

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fa25b467 by Étienne Mollier at 2023-12-08T10:50:52+01:00
New upstream version 2023-12-01+ds
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5a380efc by Étienne Mollier at 2023-12-08T10:50:58+01:00
Update upstream source from tag 'upstream/2023-12-01+ds'

Update to upstream version '2023-12-01+ds'
with Debian dir 22dd2f83f3de9d21bd61ac87a4f0aad181c5a0d6
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1f8d125c by Étienne Mollier at 2023-12-08T10:54:33+01:00
remove_getopt_code_copy.patch: refresh.

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f796160c by Étienne Mollier at 2023-12-08T11:04:38+01:00
simd_fixes: patch refresh.

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1f41d540 by Étienne Mollier at 2023-12-08T13:09:29+01:00
missing-include.patch: new.

This patch fixes a build failure when targeting non-simd machines.

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740c6f24 by Étienne Mollier at 2023-12-08T13:11:07+01:00
ready to upload to unstable.

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23 changed files:

- ChangeLog
- VERSION
- debian/changelog
- + debian/patches/missing-include.patch
- debian/patches/remove_getopt_code_copy.patch
- debian/patches/series
- debian/patches/simd_fixes
- src/Makefile.am
- src/access.c
- src/altsplice.c
- src/bitpack64-readtwo.c
- src/bitvector.c
- src/bitvector.h
- src/chrnum.h
- src/compress.c
- src/compress.h
- src/concordance.c
- src/concordance.h
- src/dinucl_bits.c
- src/dinucl_bits.h
- src/ef64.c
- src/exon.c
- src/exon.h


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/gmap/-/compare/bf4c27201da8e2330c9d20cee16b1f4d808ef66c...740c6f240513f6f6e7916db899b34cc9fb637131

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View it on GitLab: https://salsa.debian.org/med-team/gmap/-/compare/bf4c27201da8e2330c9d20cee16b1f4d808ef66c...740c6f240513f6f6e7916db899b34cc9fb637131
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