[med-svn] [Git][med-team/pique][master] 4 commits: Added patch to fix smartpca command

[Israel Komolehin (@Komolehin)]

Israel Komolehin pushed to branch master at Debian Med / pique


Commits:
fe7a3237 by Komolehin Israel Timilehin at 2023-12-12T16:43:02+00:00
Added patch to fix smartpca command

- - - - -
74b00c1c by Komolehin Israel Timilehin at 2023-12-12T16:44:40+00:00
Added autopkgtest

- - - - -
91c94c60 by Komolehin Israel Timilehin at 2023-12-12T17:01:16+00:00
Close Bug

- - - - -
bb78acdb by Komolehin Israel Timilehin at 2023-12-12T17:05:34+00:00
Updated debian/tests/control

- - - - -


6 changed files:

- debian/changelog
- + debian/patches/series
- + debian/patches/smartpca_fix.diff
- − debian/tests/_control_
- + debian/tests/control
- − debian/tests/run-unit-test


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,10 @@
+pique (1.0-7) UNRELEASED; urgency=medium
+
+  * Added patch to fix smartpca command
+  * Added autopkgtest (Closes: #986194)
+
+ -- Komolehin Israel Timilehin <komolehinisrael at gmail.com>  Tue, 12 Dec 2023 16:57:46 +0000
+
 pique (1.0-6) unstable; urgency=medium
 
   * Team upload.


=====================================
debian/patches/series
=====================================
@@ -0,0 +1 @@
+smartpca_fix.diff


=====================================
debian/patches/smartpca_fix.diff
=====================================
@@ -0,0 +1,11 @@
+--- a/bin/pique-input
++++ b/bin/pique-input
+@@ -838,7 +838,7 @@
+     must_close($par_fh);
+ 
+     # run smartpca
+-    run("smartpca -p $par_file > $out-smartpca.log");
++    run("/usr/lib/eigensoft/smartpca -p $par_file > $out-smartpca.log");
+ 
+     # tidy up
+     if ( !$opt_d ) {


=====================================
debian/tests/_control_ deleted
=====================================
@@ -1,3 +0,0 @@
-Tests: run-unit-test
-Depends: @
-Restrictions: allow-stderr


=====================================
debian/tests/control
=====================================
@@ -0,0 +1,3 @@
+Test-command: cd test && make
+Depends: pique, pique-doc, wget, r-cran-hmisc
+Restrictions: allow-stderr, needs-internet


=====================================
debian/tests/run-unit-test deleted
=====================================
@@ -1,15 +0,0 @@
-#!/bin/bash
-set -e
-
-pkg=pique
-
-if [ "${AUTOPKGTEST_TMP}" = "" ] ; then
-  AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
-  trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM
-fi
-
-cp -a /usr/share/doc/${pkg}/examples/* "${AUTOPKGTEST_TMP}"
-
-cd "${AUTOPKGTEST_TMP}"
-
-make



View it on GitLab: https://salsa.debian.org/med-team/pique/-/compare/d7cf8f68d7573bd2e9c6c1ae8dea3f26d1b32485...bb78acdbb21aaa147e24b47b32134b1575a8b0bd

-- 
View it on GitLab: https://salsa.debian.org/med-team/pique/-/compare/d7cf8f68d7573bd2e9c6c1ae8dea3f26d1b32485...bb78acdbb21aaa147e24b47b32134b1575a8b0bd
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