[med-svn] [Git][med-team/jellyfish][master] 11 commits: New upstream version 2.3.1

[Étienne Mollier (@emollier)]

Étienne Mollier pushed to branch master at Debian Med / jellyfish


Commits:
cc7d5596 by Étienne Mollier at 2023-12-13T18:09:55+01:00
New upstream version 2.3.1
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6e0560ad by Étienne Mollier at 2023-12-13T18:09:55+01:00
routine-update: New upstream version

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8588d11a by Étienne Mollier at 2023-12-13T18:09:57+01:00
Update upstream source from tag 'upstream/2.3.1'

Update to upstream version '2.3.1'
with Debian dir d65ecd57ffc1018a909f3b4553fadee2bfbbba80
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25232ff7 by Étienne Mollier at 2023-12-13T18:10:00+01:00
routine-update: Build-Depends: s/dh-python/dh-sequence-python3/

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ac6eede3 by Étienne Mollier at 2023-12-13T18:11:57+01:00
manpage_whatis_entry.patch: reduce.

Most of the issues it addressed are now sorted, except the "\-"
separating the whatis field.

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5ae95d91 by Étienne Mollier at 2023-12-13T18:14:16+01:00
reproducible.patch: remove: applied upstream.

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27bd541c by Étienne Mollier at 2023-12-13T18:17:28+01:00
fix_replacement_of_-L_option.patch: remove: applied upstream.

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785806c2 by Étienne Mollier at 2023-12-13T18:18:04+01:00
patch test_needs_bash: refresh.

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43ea907f by Étienne Mollier at 2023-12-13T18:19:48+01:00
fix-autoreconf.patch: delete: applied upstream.

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1dac4240 by Étienne Mollier at 2023-12-13T18:20:49+01:00
gcc-12.patch: delete: applied upstream.

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0d1714e6 by Étienne Mollier at 2023-12-13T18:28:17+01:00
ready to upload to unstable.

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30 changed files:

- + .github/workflows/c-cpp.yml
- .gitignore
- + CODE_OF_CONDUCT.md
- Makefile.am
- README.md
- configure.ac
- debian/changelog
- debian/control
- − debian/patches/fix-autoreconf.patch
- − debian/patches/fix_replacement_of_-L_option.patch
- − debian/patches/gcc-12.patch
- debian/patches/manpage_whatis_entry.patch
- − debian/patches/reproducible.patch
- debian/patches/series
- debian/patches/test_needs_bash
- debian/rules
- doc/jellyfish.man
- examples/count_in_file/Makefile
- examples/jf_count_dump/Makefile
- examples/query_per_sequence/Makefile
- include/jellyfish/generic_file_header.hpp
- include/jellyfish/mer_dna.hpp
- include/jellyfish/sorted_dumper.hpp
- lib/generator_manager.cc
- lib/jsoncpp.cpp
- m4/m4-ax_ext.m4
- m4/m4-ax_python_devel.m4
- swig/Readme.md
- swig/Tuprules.tup
- swig/perl5/Makefile.PL


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/jellyfish/-/compare/7e3306cff4f176c59b7f47f206aa2e97b20fd9ab...0d1714e69922aa4e85b4de9cf2366b2850784eec

-- 
View it on GitLab: https://salsa.debian.org/med-team/jellyfish/-/compare/7e3306cff4f176c59b7f47f206aa2e97b20fd9ab...0d1714e69922aa4e85b4de9cf2366b2850784eec
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