[med-svn] [Git][med-team/community/helper-scripts][master] automatic update

Andreas Tille (@tille) gitlab at salsa.debian.org
Sun Dec 17 01:43:45 GMT 2023



Andreas Tille pushed to branch master at Debian Med / community / helper-scripts


Commits:
2603b4db by Andreas Tille at 2023-12-17T01:43:35+00:00
automatic update

- - - - -


4 changed files:

- debian-med-tests.txt
- debian-science-tests.txt
- outdated_med-packages.txt
- python-team-tests.txt


Changes:

=====================================
debian-med-tests.txt
=====================================
@@ -1,4 +1,4 @@
-Last-Update: Sat, 16 Dec 2023 13:42:05 +0000
+Last-Update: Sun, 17 Dec 2023 01:42:04 +0000
 
  Source                        | Vote   | Tasks                                      |                                 Tags                                 
 -------------------------------+--------+--------------------------------------------+----------------------------------------------------------------------
@@ -7,7 +7,7 @@ Last-Update: Sat, 16 Dec 2023 13:42:05 +0000
  adun.app                      |     11 | {bio}                                      | 
  mrtrix3                       |      9 | {imaging}                                  | 
  orthanc-gdcm                  |      9 | {imaging}                                  | 
- oscar                         |      9 | {practice,data,tools}                      | 
+ oscar                         |      9 | {tools,practice,data}                      | 
  biojava-live                  |      8 | {bio-dev}                                  | 
  orthanc-postgresql            |      8 | {imaging}                                  | 
  orthanc-mysql                 |      7 | {imaging}                                  | 
@@ -25,18 +25,18 @@ Last-Update: Sat, 16 Dec 2023 13:42:05 +0000
  piler                         |      4 | {bio}                                      | 
  treeview                      |      4 | {bio-phylogeny,bio}                        | 
  beast-mcmc                    |      3 | {bio-phylogeny,bio}                        | 
- dextractor                    |      3 | {bio,covid-19}                             | 
+ dextractor                    |      3 | {covid-19,bio}                             | 
  ghmm                          |      3 | {bio}                                      | 
  libdivsufsort                 |      3 | {bio-dev}                                  | 
- melting                       |      3 | {bio,cloud}                                | 
- mhap                          |      3 | {bio,bio-ngs}                              | 
+ melting                       |      3 | {cloud,bio}                                | 
+ mhap                          |      3 | {bio-ngs,bio}                              | 
  phyutility                    |      3 | {bio,cloud}                                | 
  proalign                      |      3 | {bio,bio-phylogeny}                        | 
  sibsim4                       |      3 | {bio,cloud}                                | 
- spread-phy                    |      3 | {bio-phylogeny,bio}                        | 
+ spread-phy                    |      3 | {bio,bio-phylogeny}                        | 
  staden                        |      3 | {bio}                                      | 
- thesias                       |      3 | {covid-19,bio}                             | 
- arden                         |      2 | {bio,cloud}                                | 
+ thesias                       |      3 | {bio,covid-19}                             | 
+ arden                         |      2 | {cloud,bio}                                | 
  bitseq                        |      2 | {bio}                                      | 
  blimps                        |      2 | {bio}                                      | 
  brig                          |      2 | {bio}                                      | 
@@ -48,15 +48,15 @@ Last-Update: Sat, 16 Dec 2023 13:42:05 +0000
  librdp-taxonomy-tree-java     |      2 | {bio-dev}                                  | 
  mauve-aligner                 |      2 | {bio}                                      | 
  microbegps                    |      2 | {bio}                                      | 
- pigx-rnaseq                   |      2 | {bio,covid-19}                             | 
+ pigx-rnaseq                   |      2 | {covid-19,bio}                             | 
  placnet                       |      2 | {bio}                                      | 
- plasmidid                     |      2 | {bio,covid-19}                             | 
+ plasmidid                     |      2 | {covid-19,bio}                             | 
  pscan-chip                    |      2 | {bio}                                      | 
- python-seqcluster             |      2 | {covid-19,bio-dev}                         | 
+ python-seqcluster             |      2 | {bio-dev,covid-19}                         | 
  rambo-k                       |      2 | {bio}                                      | 
  rdp-alignment                 |      2 | {bio}                                      | 
  rdp-classifier                |      2 | {bio}                                      | 
- rtax                          |      2 | {cloud,bio}                                | 
+ rtax                          |      2 | {bio,cloud}                                | 
  saint                         |      2 | {bio}                                      | 
  seq-gen                       |      2 | {bio}                                      | 
  sga                           |      2 | {bio}                                      | 
@@ -71,19 +71,19 @@ Last-Update: Sat, 16 Dec 2023 13:42:05 +0000
  tophat-recondition            |      2 | {bio,covid-19}                             | 
  trace2dbest                   |      2 | {bio}                                      | 
  tracetuner                    |      2 | {bio}                                      | 
- vienna-rna                    |      2 | {bio,covid-19}                             | 
- anfo                          |      1 | {cloud,bio}                                | 
+ vienna-rna                    |      2 | {covid-19,bio}                             | 
+ anfo                          |      1 | {bio,cloud}                                | 
  btllib                        |      1 | {bio}                                      | 
- cat-bat                       |      1 | {covid-19,bio}                             | 
- clonalframeml                 |      1 | {bio,covid-19}                             | 
- cufflinks                     |      1 | {cloud,bio}                                | 
+ cat-bat                       |      1 | {bio,covid-19}                             | 
+ clonalframeml                 |      1 | {covid-19,bio}                             | 
+ cufflinks                     |      1 | {bio,cloud}                                | 
  cutesv                        |      1 | {bio}                                      | 
  eegdev                        |      1 | {imaging-dev}                              | 
  embassy-domainatrix           |      1 | {cloud,bio}                                | 
- embassy-domalign              |      1 | {bio,cloud}                                | 
+ embassy-domalign              |      1 | {cloud,bio}                                | 
  embassy-domsearch             |      1 | {bio,cloud}                                | 
  ipig                          |      1 | {bio}                                      | 
- jmodeltest                    |      1 | {bio-phylogeny,bio}                        | 
+ jmodeltest                    |      1 | {bio,bio-phylogeny}                        | 
  kmerresistance                |      1 | {bio}                                      | 
  lamarc                        |      1 | {bio}                                      | 
  libchado-perl                 |      1 | {bio-dev}                                  | 
@@ -108,7 +108,7 @@ Last-Update: Sat, 16 Dec 2023 13:42:05 +0000
  ska                           |      1 | {bio}                                      | 
  surpyvor                      |      1 | {bio}                                      | 
  terraphast                    |      1 | {bio}                                      | 
- varscan                       |      1 | {covid-19,bio}                             | 
+ varscan                       |      1 | {bio,covid-19}                             | 
  xpore                         |      1 | {bio}                                      | 
  xxsds-dynamic                 |      1 | {bio-dev}                                  | 
  acedb                         |      0 | {cloud,bio}                                | 
@@ -123,7 +123,7 @@ Last-Update: Sat, 16 Dec 2023 13:42:05 +0000
  emboss-explorer               |      0 | {bio}                                      | 
  fis-gtm                       |      0 | {his}                                      | 
  gatk-bwamem                   |      0 | {bio-dev}                                  | 
- htscodecs                     |      0 | {covid-19,bio-dev}                         | 
+ htscodecs                     |      0 | {bio-dev,covid-19}                         | 
  insighttoolkit5               |      0 | {imaging-dev}                              | 
  libbioparser-dev              |      0 | {bio-dev}                                  | 
  libbiosoup-dev                |      0 | {bio-dev}                                  | 
@@ -150,7 +150,7 @@ Last-Update: Sat, 16 Dec 2023 13:42:05 +0000
  metastudent-data              |      0 | {bio}                                      | 
  metastudent-data-2            |      0 | {bio}                                      | 
  mia                           |      0 | {imaging-dev}                              | 
- milib                         |      0 | {covid-19,bio-dev}                         | 
+ milib                         |      0 | {bio-dev,covid-19}                         | 
  ncbi-vdb                      |      0 | {bio-dev}                                  | 
  opencfu                       |      0 | {laboratory}                               | 
  orthanc-imagej                |      0 | {imaging}                                  | 
@@ -162,13 +162,13 @@ Last-Update: Sat, 16 Dec 2023 13:42:05 +0000
  savvy                         |      0 | {bio-dev}                                  | 
  sbmltoolbox                   |      0 | {bio-dev}                                  | 
  sight                         |      0 | {imaging-dev}                              | 
- smrtanalysis                  |      0 | {covid-19,bio}                             | 
+ smrtanalysis                  |      0 | {bio,covid-19}                             | 
  srf                           |      0 | {bio-dev}                                  | 
  terraphast                    |      0 | {bio-dev}                                  | 
- tipp                          |      0 | {covid-19,bio}                             | 
+ tipp                          |      0 | {bio,covid-19}                             | 
  xdffileio                     |      0 | {imaging-dev}                              | 
  gatk-fermilite                |     -1 | {bio-dev}                                  | 
- libmaus2                      |     -1 | {bio-dev,covid-19}                         | 
+ libmaus2                      |     -1 | {covid-19,bio-dev}                         | 
  mssstest                      |     -1 | {tools}                                    | 
 (194 rows)
 


=====================================
debian-science-tests.txt
=====================================
@@ -1,12 +1,12 @@
-Last-Update: Sat, 16 Dec 2023 13:42:09 +0000
+Last-Update: Sun, 17 Dec 2023 01:42:09 +0000
 
        Source                              | Vote   |             Tasks                                                   |                                Tags                                
 -------------------------------------------+--------+---------------------------------------------------------------------+--------------------------------------------------------------------
- sympy                                     |   4695 | {physics,nanoscale-physics}                                         | 
+ sympy                                     |   4695 | {nanoscale-physics,physics}                                         | 
  gts                                       |   4554 | {viewing}                                                           | 
  nltk                                      |   2468 | {linguistics}                                                       | 
  opencascade                               |    538 | {simulations}                                                       | 
- suitesparse                               |    277 | {mathematics-dev,numericalcomputation}                              | 
+ suitesparse                               |    277 | {numericalcomputation,mathematics-dev}                              | 
  spacenavd                                 |    161 | {tools}                                                             | 
  armadillo                                 |    158 | {mathematics-dev}                                                   | 
  python-pyqtgraph                          |    154 | {viewing}                                                           | 
@@ -15,13 +15,13 @@ Last-Update: Sat, 16 Dec 2023 13:42:09 +0000
  atlas                                     |     88 | {mathematics-dev}                                                   | 
  scalapack                                 |     52 | {nanoscale-physics-dev}                                             | 
  imview                                    |     39 | {viewing}                                                           | 
- fftw                                      |     37 | {mathematics-dev,meteorology-dev,physics-dev}                       | 
+ fftw                                      |     37 | {meteorology-dev,mathematics-dev,physics-dev}                       | 
  arduino-mk                                |     30 | {robotics}                                                          | 
  pyzo                                      |     30 | {numericalcomputation}                                              | 
  ntl                                       |     29 | {mathematics-dev}                                                   | 
  flintqs                                   |     28 | {mathematics}                                                       | 
  ppl                                       |     28 | {numericalcomputation}                                              | 
- flann                                     |     26 | {engineering-dev,mathematics-dev}                                   | 
+ flann                                     |     26 | {mathematics-dev,engineering-dev}                                   | 
  cliquer                                   |     22 | {mathematics}                                                       | 
  libm4ri                                   |     22 | {mathematics-dev}                                                   | 
  setzer                                    |     22 | {typesetting}                                                       | 
@@ -29,12 +29,12 @@ Last-Update: Sat, 16 Dec 2023 13:42:09 +0000
  mbpoll                                    |     21 | {simulations}                                                       | 
  bossa                                     |     19 | {devices}                                                           | 
  dune-uggrid                               |     19 | {mathematics-dev}                                                   | 
- rubiks                                    |     19 | {geometry,mathematics}                                              | 
+ rubiks                                    |     19 | {mathematics,geometry}                                              | 
  gts                                       |     18 | {viewing-dev}                                                       | 
  sketch                                    |     18 | {typesetting}                                                       | 
  matlab-support                            |     17 | {numericalcomputation,mathematics}                                  | 
- fftw                                      |     16 | {meteorology-dev,physics-dev,mathematics-dev}                       | 
- guiqwt                                    |     16 | {numericalcomputation,viewing}                                      | 
+ fftw                                      |     16 | {physics-dev,meteorology-dev,mathematics-dev}                       | 
+ guiqwt                                    |     16 | {viewing,numericalcomputation}                                      | 
  feedgnuplot                               |     15 | {viewing}                                                           | 
  lxi-tools                                 |     15 | {engineering,dataacquisition}                                       | 
  picosat                                   |     14 | {logic}                                                             | 
@@ -46,20 +46,20 @@ Last-Update: Sat, 16 Dec 2023 13:42:09 +0000
  mathgl                                    |     11 | {viewing}                                                           | 
  auto-07p                                  |     10 | {mathematics}                                                       | 
  cliquer                                   |     10 | {mathematics-dev}                                                   | 
- debian-science                            |     10 | {physics,machine-learning,mathematics,nanoscale-physics,economics}  | 
+ debian-science                            |     10 | {mathematics,economics,physics,machine-learning,nanoscale-physics}  | 
  lrcalc                                    |     10 | {mathematics-dev}                                                   | 
  ros-vcstool                               |     10 | {robotics-dev}                                                      | 
  apophenia                                 |      9 | {statistics}                                                        | 
- coinor-symphony                           |      9 | {mathematics,numericalcomputation,logic}                            | 
- debian-science                            |      9 | {economics,nanoscale-physics,machine-learning,physics}              | 
+ coinor-symphony                           |      9 | {logic,mathematics,numericalcomputation}                            | 
+ debian-science                            |      9 | {nanoscale-physics,physics,economics,machine-learning}              | 
  feff85exafs                               |      9 | {chemistry}                                                         | 
  muparser                                  |      9 | {mathematics-dev}                                                   | 
- persalys                                  |      9 | {mathematics,engineering,statistics}                                | 
+ persalys                                  |      9 | {statistics,mathematics,engineering}                                | 
  polylib                                   |      9 | {mathematics}                                                       | 
  urdfdom-headers                           |      9 | {robotics-dev}                                                      | 
  vitables                                  |      9 | {numericalcomputation}                                              | 
- debian-science                            |      8 | {physics,nanoscale-physics,statistics,economics}                    | 
- etsf-io                                   |      8 | {physics,nanoscale-physics}                                         | 
+ debian-science                            |      8 | {economics,physics,statistics,nanoscale-physics}                    | 
+ etsf-io                                   |      8 | {nanoscale-physics,physics}                                         | 
  libitpp                                   |      8 | {engineering-dev,mathematics-dev}                                   | 
  pcl                                       |      8 | {robotics-dev}                                                      | 
  form                                      |      7 | {mathematics}                                                       | 
@@ -71,11 +71,11 @@ Last-Update: Sat, 16 Dec 2023 13:42:09 +0000
  gf2x                                      |      6 | {mathematics-dev}                                                   | 
  ipe-tools                                 |      6 | {typesetting}                                                       | 
  libm4rie                                  |      6 | {mathematics-dev}                                                   | 
- libvigraimpex                             |      6 | {machine-learning,imageanalysis-dev}                                | 
+ libvigraimpex                             |      6 | {imageanalysis-dev,machine-learning}                                | 
  lrcalc                                    |      6 | {mathematics}                                                       | 
- persalys                                  |      6 | {mathematics,engineering,statistics}                                | 
+ persalys                                  |      6 | {engineering,mathematics,statistics}                                | 
  psurface                                  |      6 | {numericalcomputation}                                              | 
- python-escript                            |      6 | {engineering,numericalcomputation,simulations}                      | 
+ python-escript                            |      6 | {simulations,engineering,numericalcomputation}                      | 
  qd                                        |      6 | {mathematics-dev}                                                   | 
  ratpoints                                 |      6 | {mathematics-dev}                                                   | 
  rheolef                                   |      6 | {mathematics}                                                       | 
@@ -92,13 +92,13 @@ Last-Update: Sat, 16 Dec 2023 13:42:09 +0000
  libxsmm                                   |      5 | {mathematics-dev}                                                   | 
  libzn-poly                                |      5 | {mathematics-dev}                                                   | 
  syrthes                                   |      5 | {engineering}                                                       | 
- code-saturne                              |      4 | {mathematics-dev,engineering-dev}                                   | 
+ code-saturne                              |      4 | {engineering-dev,mathematics-dev}                                   | 
  debian-science                            |      4 | {nanoscale-physics-dev}                                             | 
  dune-localfunctions                       |      4 | {mathematics-dev}                                                   | 
  libcgns                                   |      4 | {engineering-dev}                                                   | 
  libcgns                                   |      4 | {engineering}                                                       | 
  libmatheval                               |      4 | {mathematics-dev}                                                   | 
- libvigraimpex                             |      4 | {machine-learning,imageanalysis-dev}                                | 
+ libvigraimpex                             |      4 | {imageanalysis-dev,machine-learning}                                | 
  metis-edf                                 |      4 | {numericalcomputation,engineering}                                  | 
  ompl                                      |      4 | {robotics-dev}                                                      | 
  opencascade                               |      4 | {simulations}                                                       | 
@@ -107,7 +107,7 @@ Last-Update: Sat, 16 Dec 2023 13:42:09 +0000
  sdpb                                      |      4 | {highenergy-physics,numericalcomputation}                           | 
  taurus                                    |      4 | {dataacquisition}                                                   | 
  toontag                                   |      4 | {numericalcomputation}                                              | 
- toulbar2                                  |      4 | {mathematics,numericalcomputation,logic,physics}                    | 
+ toulbar2                                  |      4 | {logic,mathematics,physics,numericalcomputation}                    | 
  tulip                                     |      4 | {viewing-dev}                                                       | 
  coda                                      |      3 | {meteorology}                                                       | 
  debian-science                            |      3 | {economics}                                                         | 
@@ -116,7 +116,7 @@ Last-Update: Sat, 16 Dec 2023 13:42:09 +0000
  neartree                                  |      3 | {mathematics-dev,numericalcomputation}                              | 
  newmat                                    |      3 | {mathematics-dev}                                                   | 
  scram                                     |      3 | {engineering}                                                       | 
- spfft                                     |      3 | {physics-dev,meteorology-dev,nanoscale-physics-dev,mathematics-dev} | 
+ spfft                                     |      3 | {physics-dev,mathematics-dev,nanoscale-physics-dev,meteorology-dev} | 
  ssm                                       |      3 | {nanoscale-physics}                                                 | 
  toon                                      |      3 | {numericalcomputation}                                              | 
  uctodata                                  |      3 | {linguistics}                                                       | 
@@ -167,7 +167,7 @@ Last-Update: Sat, 16 Dec 2023 13:42:09 +0000
  frog                                      |      1 | {linguistics}                                                       | 
  frogdata                                  |      1 | {linguistics}                                                       | 
  harp                                      |      1 | {meteorology}                                                       | 
- hepmc3                                    |      1 | {highenergy-physics-dev,nanoscale-physics-dev}                      | 
+ hepmc3                                    |      1 | {nanoscale-physics-dev,highenergy-physics-dev}                      | 
  irstlm                                    |      1 | {linguistics}                                                       | 
  libcvd                                    |      1 | {imageanalysis-dev}                                                 | 
  liblxi                                    |      1 | {engineering-dev,dataacquisition-dev}                               | 
@@ -177,15 +177,15 @@ Last-Update: Sat, 16 Dec 2023 13:42:09 +0000
  mpi4py-fft                                |      1 | {mathematics-dev}                                                   | 
  mrmpi                                     |      1 | {tools}                                                             | 
  mseed2sac                                 |      1 | {dataacquisition-dev}                                               | 
- ncrystal                                  |      1 | {nanoscale-physics-dev,highenergy-physics-dev}                      | 
+ ncrystal                                  |      1 | {highenergy-physics-dev,nanoscale-physics-dev}                      | 
  openmesh                                  |      1 | {mathematics-dev}                                                   | 
  psurface                                  |      1 | {numericalcomputation}                                              | 
  python-aws-xray-sdk                       |      1 | {dataacquisition-dev}                                               | 
  python-opcodes                            |      1 | {tools}                                                             | 
  sac2mseed                                 |      1 | {geography}                                                         | 
- schroedinger-coordgenlibs                 |      1 | {chemistry,nanoscale-physics-dev}                                   | 
+ schroedinger-coordgenlibs                 |      1 | {nanoscale-physics-dev,chemistry}                                   | 
  ssm                                       |      1 | {nanoscale-physics-dev}                                             | 
- trilinos                                  |      1 | {mathematics-dev,engineering-dev,physics-dev}                       | 
+ trilinos                                  |      1 | {physics-dev,mathematics-dev,engineering-dev}                       | 
  vdt                                       |      1 | {mathematics-dev}                                                   | 
  veccore                                   |      1 | {mathematics-dev}                                                   | 
  amgcl                                     |      0 | {mathematics-dev}                                                   | 
@@ -199,7 +199,7 @@ Last-Update: Sat, 16 Dec 2023 13:42:09 +0000
  apertium-swe-dan                          |      0 | {linguistics}                                                       | 
  apertium-urd                              |      0 | {linguistics}                                                       | 
  apertium-urd-hin                          |      0 | {linguistics}                                                       | 
- calculix-ccx-doc                          |      0 | {numericalcomputation,simulations,engineering}                      | 
+ calculix-ccx-doc                          |      0 | {numericalcomputation,engineering,simulations}                      | 
  calculix-ccx-test                         |      0 | {engineering,simulations,numericalcomputation}                      | 
  clhep                                     |      0 | {highenergy-physics-dev}                                            | 
  coda                                      |      0 | {meteorology-dev}                                                   | 
@@ -226,7 +226,7 @@ Last-Update: Sat, 16 Dec 2023 13:42:09 +0000
  ompl                                      |      0 | {robotics}                                                          | 
  opengv                                    |      0 | {geometry}                                                          | 
  ortools                                   |      0 | {mathematics-dev}                                                   | 
- python-escript                            |      0 | {engineering,simulations,numericalcomputation}                      | 
+ python-escript                            |      0 | {simulations,engineering,numericalcomputation}                      | 
  qrupdate                                  |      0 | {mathematics-dev}                                                   | 
  ros-collada-urdf                          |      0 | {robotics}                                                          | 
  ros-metapackages                          |      0 | {robotics-dev}                                                      | 


=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.

=====================================
python-team-tests.txt
=====================================
@@ -1,4 +1,4 @@
-Last-Update: Sat, 16 Dec 2023 13:42:12 +0000
+Last-Update: Sun, 17 Dec 2023 01:42:13 +0000
 
      Source                             | Vote   |                          Tags                          
 ----------------------------------------+--------+--------------------------------------------------------



View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/2603b4db50ccbd17765cc1608dbae449ee9fa0fa

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