[med-svn] [Git][med-team/python-deeptools][master] 14 commits: routine-update: New upstream version

[Étienne Mollier (@emollier)]

Étienne Mollier pushed to branch master at Debian Med / python-deeptools


Commits:
b47aded7 by Étienne Mollier at 2023-12-18T09:39:43+01:00
routine-update: New upstream version

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df1ba24b by Étienne Mollier at 2023-12-18T09:39:44+01:00
New upstream version 3.5.4+dfsg
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a95f85cd by Étienne Mollier at 2023-12-18T09:39:56+01:00
Update upstream source from tag 'upstream/3.5.4+dfsg'

Update to upstream version '3.5.4+dfsg'
with Debian dir 90fc09d73cfad15d04559cdc2a09efafb9cac11f
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e031c9ff by Étienne Mollier at 2023-12-18T09:39:59+01:00
routine-update: Build-Depends: s/dh-python/dh-sequence-python3/

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c50efa5f by Étienne Mollier at 2023-12-18T09:41:02+01:00
tmp_inhibit_test_readFiltering.patch: refresh.

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cacd12e3 by Étienne Mollier at 2023-12-18T09:49:22+01:00
python2to3_for_executables.patch: refresh.

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114c2688 by Étienne Mollier at 2023-12-18T09:51:17+01:00
pytest.patch: delete: applied upstream.

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08c978b2 by Étienne Mollier at 2023-12-18T09:52:49+01:00
numpy-1.24.patch: delete: applied upstream.

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01157dab by Étienne Mollier at 2023-12-18T10:18:41+01:00
g/control: build depends on pybuild-plugin-pyproject.

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a25741fc by Étienne Mollier at 2023-12-18T10:19:23+01:00
d/rules: defer test override to pybuild envvars.

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f0dc2a49 by Étienne Mollier at 2023-12-18T10:20:34+01:00
d/{rules,clean}: declare files cleanup instead of scripting.

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95c21e09 by Étienne Mollier at 2023-12-18T11:16:07+01:00
d/control: enable autopkgtest-pkg-pybuild.

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0acd78e4 by Étienne Mollier at 2023-12-18T11:16:36+01:00
d/tests/: delete: deferred to autopkgtest-pkg-pybuild.

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18d968c2 by Étienne Mollier at 2023-12-18T11:21:49+01:00
ready to upload to unstable.

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30 changed files:

- + .github/test_and_build.yml
- .github/workflows/planemo.yml
- .github/workflows/pypi.yml
- .github/workflows/test.yml
- .planemo.sh
- + .readthedocs.yaml
- CHANGES.txt
- − bin/alignmentSieve
- − bin/bamCompare
- − bin/bamCoverage
- − bin/bamPEFragmentSize
- − bin/bigwigAverage
- − bin/bigwigCompare
- − bin/computeGCBias
- − bin/computeMatrix
- − bin/computeMatrixOperations
- − bin/correctGCBias
- − bin/deeptools
- − bin/estimateReadFiltering
- − bin/multiBamSummary
- − bin/multiBigwigSummary
- − bin/plotCorrelation
- − bin/plotCoverage
- − bin/plotEnrichment
- − bin/plotFingerprint
- − bin/plotHeatmap
- − bin/plotPCA
- − bin/plotProfile
- debian/changelog
- + debian/clean


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/python-deeptools/-/compare/4bc8b743e47e53254d6760b48b3c4a3d2107dc19...18d968c205c9033f0e866bc30c2a6f2e8bc26805

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View it on GitLab: https://salsa.debian.org/med-team/python-deeptools/-/compare/4bc8b743e47e53254d6760b48b3c4a3d2107dc19...18d968c205c9033f0e866bc30c2a6f2e8bc26805
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