[med-svn] [Git][med-team/genomethreader][master] 3 commits: enable building twice in a row

[Sascha Steinbiss (@satta)]

Sascha Steinbiss pushed to branch master at Debian Med / genomethreader


Commits:
f8935256 by Sascha Steinbiss at 2023-12-18T18:29:58+01:00
enable building twice in a row

- - - - -
8e427f10 by Sascha Steinbiss at 2023-12-18T18:30:06+01:00
bump Standards-Version

- - - - -
9e23f017 by Sascha Steinbiss at 2023-12-18T18:30:19+01:00
add d/copyright section for debian/ directory

- - - - -


6 changed files:

- debian/changelog
- debian/control
- debian/copyright
- + debian/patches/extend-clean.patch
- debian/patches/series
- debian/rules


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,12 @@
+genomethreader (1.7.3+dfsg-8) unstable; urgency=medium
+
+  * Enable building twice in a row.
+    Closes: #1044585, #1049675
+  * Bump Standards-Version.
+  * Add d/copyright section for debian/ directory.
+
+ -- Sascha Steinbiss <satta at debian.org>  Mon, 18 Dec 2023 18:19:28 +0100
+
 genomethreader (1.7.3+dfsg-7) unstable; urgency=medium
 
   * Fix watchfile to detect new versions on github


=====================================
debian/control
=====================================
@@ -13,7 +13,7 @@ Build-Depends: debhelper-compat (= 13),
                liblua5.1-0-dev,
                libtre-dev,
                asciidoctor
-Standards-Version: 4.6.1
+Standards-Version: 4.6.2
 Rules-Requires-Root: no
 Vcs-Browser: https://salsa.debian.org/med-team/genomethreader
 Vcs-Git: https://salsa.debian.org/med-team/genomethreader.git


=====================================
debian/copyright
=====================================
@@ -9,6 +9,10 @@ Copyright: © 2003-2019 Gordon Gremme <gordon at gremme.org>
              2003-2008 Center for Bioinformatics, University of Hamburg
 License: ISC
 
+Files: debian/*
+Copyright: © 2020-2023 Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+License: ISC
+
 Files: src/gth/bssm_param.c
 Copyright: (c) 2003-2013 Gordon Gremme <gordon at gremme.org>
            (c) 2003-2005 Michael E Sparks <mespar1 at iastate.edu>


=====================================
debian/patches/extend-clean.patch
=====================================
@@ -0,0 +1,33 @@
+--- a/Makefile
++++ b/Makefile
+@@ -490,6 +490,30 @@
+ 	find gthdata -name '*.md5' | xargs rm -f
+ 	find gthdata -name '*.ois' | xargs rm -f
+ 	find gthdata -name '*.sds' | xargs rm -f
++	find gthdata -name '*.suf' | xargs rm -f
++	find gthdata -name '*.bck' | xargs rm -f
++	find gthdata -name '*.llv' | xargs rm -f
++	find gthdata -name '*.bwt' | xargs rm -f
++	find gthdata -name '*.tis' | xargs rm -f
++	find gthdata -name '*.ssp' | xargs rm -f
++	find gthdata -name '*.lcp' | xargs rm -f
++	find gthdata -name '*.sti1' | xargs rm -f
++	find testdata -name '*.des' | xargs rm -f
++	find testdata -name '*.esq' | xargs rm -f
++	find testdata -name '*.md5' | xargs rm -f
++	find testdata -name '*.ois' | xargs rm -f
++	find testdata -name '*.sds' | xargs rm -f
++	find testdata -name '*.suf' | xargs rm -f
++	find testdata -name '*.bck' | xargs rm -f
++	find testdata -name '*.llv' | xargs rm -f
++	find testdata -name '*.bwt' | xargs rm -f
++	find testdata -name '*.tis' | xargs rm -f
++	find testdata -name '*.ssp' | xargs rm -f
++	find testdata -name '*.lcp' | xargs rm -f
++	find testdata -name '*.sti1' | xargs rm -f
++	find testdata -name '*.al1' | xargs rm -f
++	find testdata -name '*.prj' | xargs rm -f
++	find testdata -name '*.polya*' | xargs rm -f
+ 
+ obj/train: bin/gthbssmbuild
+ 	@mkdir -p bin/bssm


=====================================
debian/patches/series
=====================================
@@ -5,3 +5,4 @@ search-paths.patch
 m32-m64-ignore.patch
 reproducible.patch
 disable-fastdp-tests.patch
+extend-clean.patch


=====================================
debian/rules
=====================================
@@ -27,6 +27,7 @@ endif
 
 override_dh_auto_clean:
 	dh_clean
+	make licensemanager=no opt=yes 64bit=$(64BIT) cleanup
 	rm -rf bin/bssm debian/bssm bin/gthdata debian/gthdata
 	rm -rf $(CURDIR)/debian/man
 	rm -f debian/*substvars



View it on GitLab: https://salsa.debian.org/med-team/genomethreader/-/compare/4d8152c6200dba82fbee661b4df787a0bc5b02c5...9e23f0173f59b15983805709630745b58ab932de

-- 
View it on GitLab: https://salsa.debian.org/med-team/genomethreader/-/compare/4d8152c6200dba82fbee661b4df787a0bc5b02c5...9e23f0173f59b15983805709630745b58ab932de
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