[med-svn] [Git][med-team/last-align][master] 5 commits: New upstream version 1447

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / last-align


Commits:
2437b528 by Andreas Tille at 2023-02-05T20:48:31+01:00
New upstream version 1447
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72977c25 by Andreas Tille at 2023-02-05T20:48:31+01:00
routine-update: New upstream version

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ed1e0eff by Andreas Tille at 2023-02-05T20:48:36+01:00
Update upstream source from tag 'upstream/1447'

Update to upstream version '1447'
with Debian dir 6cd74b89cbbe606161195a11e2199b2c6d23bb4a
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dbea04d8 by Andreas Tille at 2023-02-05T21:02:44+01:00
Refresh patches

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f0d58f2f by Andreas Tille at 2023-02-05T21:09:16+01:00
Upload to unstable

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30 changed files:

- bin/last-train
- bin/maf-convert
- debian/changelog
- debian/patches/helpMakefiles.patch
- debian/patches/simde
- doc/last-train.rst
- doc/lastdb.rst
- doc/maf-convert.rst
- src/Alignment.cc
- src/Alignment.hh
- src/AlignmentWrite.cc
- src/Alphabet.cc
- src/Alphabet.hh
- src/GappedXdropAligner.cc
- src/GappedXdropAligner.hh
- src/GappedXdropAlignerDna.cc
- src/GappedXdropAlignerPssm.cc
- src/LastdbArguments.cc
- src/LastdbArguments.hh
- src/MultiSequence.cc
- src/MultiSequence.hh
- src/SegmentPair.cc
- src/SegmentPair.hh
- src/SubsetSuffixArray.hh
- src/SubsetSuffixArraySearch.cc
- − src/gaplessPssmXdrop.cc
- src/gaplessPssmXdrop.hh
- − src/gaplessTwoQualityXdrop.cc
- src/gaplessTwoQualityXdrop.hh
- − src/gaplessXdrop.cc


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/last-align/-/compare/dd2ce64cb36221acf16aba62cd64aab1142936fc...f0d58f2f86e6a8889b9e64421e640562a5e77c6c

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View it on GitLab: https://salsa.debian.org/med-team/last-align/-/compare/dd2ce64cb36221acf16aba62cd64aab1142936fc...f0d58f2f86e6a8889b9e64421e640562a5e77c6c
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