[med-svn] [Git][med-team/diamond-aligner][master] 4 commits: New upstream version 2.1.1

[Michael R. Crusoe (@crusoe)]

Michael R. Crusoe pushed to branch master at Debian Med / diamond-aligner


Commits:
04189ed4 by Michael R. Crusoe at 2023-02-20T12:10:49+01:00
New upstream version 2.1.1
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831ce636 by Michael R. Crusoe at 2023-02-20T12:10:58+01:00
Update upstream source from tag 'upstream/2.1.1'

Update to upstream version '2.1.1'
with Debian dir 84aab027de91bde9d99fa27bea7ff4f54956788b
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61f94858 by Michael R. Crusoe at 2023-02-20T12:12:36+01:00
New upstream version. Closes: #1030360

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c39c9c29 by Michael R. Crusoe at 2023-02-20T13:03:15+01:00
routine-update: Ready to upload to unstable

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30 changed files:

- CMakeLists.txt
- README.md
- debian/changelog
- src/ChangeLog
- src/align/extend.cpp
- src/align/global_ranking/table.cpp
- − src/align/kmer_filter.cpp
- src/align/legacy/query_mapper.cpp
- src/align/load_hits.h
- src/align/target.h
- src/basic/basic.cpp
- src/basic/config.cpp
- src/basic/config.h
- src/basic/const.h
- src/basic/value.h
- src/cluster/cascaded/recluster.cpp
- src/cluster/helpers.cpp
- src/cluster/incremental/config.cpp
- src/cluster/incremental/run.cpp
- src/data/dmnd/dmnd.cpp
- src/data/sequence_file.cpp
- src/dp/pfscan/pfscan.cpp
- src/dp/pfscan/pfscan.h
- src/dp/score_vector_int8.h
- src/dp/swipe/anchored.h
- src/output/daa/daa_write.cpp
- src/output/daa/view.cpp
- src/output/output.h
- src/output/output_format.cpp
- src/output/target_culling.h


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/diamond-aligner/-/compare/5351d170849c5a6f86d107f23252559b88d386bd...c39c9c29d29de2449048284b276e4d425a0c8c21

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View it on GitLab: https://salsa.debian.org/med-team/diamond-aligner/-/compare/5351d170849c5a6f86d107f23252559b88d386bd...c39c9c29d29de2449048284b276e4d425a0c8c21
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