[med-svn] [Git][med-team/biobambam2][upstream] New upstream version 2.0.185+ds

[Étienne Mollier (@emollier)]

Étienne Mollier pushed to branch upstream at Debian Med / biobambam2


Commits:
3393d89e by Étienne Mollier at 2023-01-01T17:30:06+01:00
New upstream version 2.0.185+ds
- - - - -


6 changed files:

- ChangeLog
- config.h.in
- configure.ac
- src/biobambam2/Licensing.hpp
- src/biobambam2/ReadHeader.hpp
- src/biobambam2/UpdateNumericalIndex.hpp


Changes:

=====================================
ChangeLog
=====================================
@@ -1,3 +1,9 @@
+biobambam2 (2.0.185-1) unstable; urgency=medium
+
+  * Add missing include directives for gcc13
+
+ -- German Tischler-Höhle <germant at miltenyibiotec.de>  Sun, 11 Dec 2022 13:21:00 +0100
+
 biobambam2 (2.0.184-1) unstable; urgency=medium
 
   * Add tagonly sort option in bamsort


=====================================
config.h.in
=====================================
@@ -6,12 +6,12 @@
 /* Define to 1 if you have the <inttypes.h> header file. */
 #undef HAVE_INTTYPES_H
 
-/* Define to 1 if you have the <memory.h> header file. */
-#undef HAVE_MEMORY_H
-
 /* Define to 1 if you have the <stdint.h> header file. */
 #undef HAVE_STDINT_H
 
+/* Define to 1 if you have the <stdio.h> header file. */
+#undef HAVE_STDIO_H
+
 /* Define to 1 if you have the <stdlib.h> header file. */
 #undef HAVE_STDLIB_H
 
@@ -54,7 +54,9 @@
 /* Define to the version of this package. */
 #undef PACKAGE_VERSION
 
-/* Define to 1 if you have the ANSI C header files. */
+/* Define to 1 if all of the C90 standard headers exist (not just the ones
+   required in a freestanding environment). This macro is provided for
+   backward compatibility; new code need not use it. */
 #undef STDC_HEADERS
 
 /* Version number of package */


=====================================
configure.ac
=====================================
@@ -1,4 +1,4 @@
-AC_INIT(biobambam2,2.0.184,[germant at miltenyibiotec.de],[biobambam2],[https://gitlab.com/german.tischler/biobambam2])
+AC_INIT(biobambam2,2.0.185,[germant at miltenyibiotec.de],[biobambam2],[https://gitlab.com/german.tischler/biobambam2])
 AC_CANONICAL_SYSTEM
 AC_PROG_LIBTOOL
 


=====================================
src/biobambam2/Licensing.hpp
=====================================
@@ -19,6 +19,7 @@
 #if ! defined(LICENSEMESSAGE_HPP)
 #define LICENSEMESSAGE_HPP
 
+#include <cstdint>
 #include <string>
 #include <vector>
 #include <map>


=====================================
src/biobambam2/ReadHeader.hpp
=====================================
@@ -18,6 +18,7 @@
 #if ! defined(BIOBAMBAM2_READHER_HPP)
 #define BIOBAMBAM2_READHER_HPP
 
+#include <cstdint>
 #include <utility>
 #include <string>
 


=====================================
src/biobambam2/UpdateNumericalIndex.hpp
=====================================
@@ -20,6 +20,7 @@
 
 #include <string>
 #include <utility>
+#include <cstdint>
 
 namespace biobambam2
 {



View it on GitLab: https://salsa.debian.org/med-team/biobambam2/-/commit/3393d89efda098bcf406b8532c3452189e067579

-- 
View it on GitLab: https://salsa.debian.org/med-team/biobambam2/-/commit/3393d89efda098bcf406b8532c3452189e067579
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