[med-svn] [Git][med-team/igv][master] 6 commits: New upstream version 2.15.4+dfsg

[Pierre Gruet (@pgt)]

Pierre Gruet pushed to branch master at Debian Med / igv


Commits:
0d90726e by Pierre Gruet at 2023-01-06T22:20:40+01:00
New upstream version 2.15.4+dfsg
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883ce417 by Pierre Gruet at 2023-01-06T22:22:58+01:00
Update upstream source from tag 'upstream/2.15.4+dfsg'

Update to upstream version '2.15.4+dfsg'
with Debian dir 006f690604181263ff55603adb98fc736f50486e
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896055b2 by Pierre Gruet at 2023-01-06T22:33:35+01:00
Refreshing patches

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4662a85f by Pierre Gruet at 2023-01-06T22:38:15+01:00
Raising Standards version to 4.6.2 (no change)

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e043dfdb by Pierre Gruet at 2023-01-06T22:38:31+01:00
Updating changelog

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d93dc52c by Pierre Gruet at 2023-01-06T22:39:15+01:00
Upload to unstable

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30 changed files:

- debian/changelog
- debian/control
- − debian/patches/URLDecoder_static_method.patch
- − debian/patches/fix_samtools_api
- − debian/patches/goby_package.patch
- − debian/patches/handle_old_htsjdk.patch
- debian/patches/omit_aws_stuff.patch
- − debian/patches/omit_out_of_date_goby_tests.patch
- debian/patches/series
- src/main/java/org/broad/igv/batch/CommandExecutor.java
- src/main/java/org/broad/igv/batch/CommandListener.java
- src/main/java/org/broad/igv/feature/genome/Genome.java
- src/main/java/org/broad/igv/feature/genome/load/JsonGenomeLoader.java
- src/main/java/org/broad/igv/feature/tribble/MUTCodec.java
- src/main/java/org/broad/igv/oauth/OAuthProvider.java
- src/main/java/org/broad/igv/prefs/Constants.java
- src/main/java/org/broad/igv/prefs/PreferencesManager.java
- src/main/java/org/broad/igv/sam/AlignmentTrack.java
- src/main/java/org/broad/igv/track/BlatTrack.java
- src/main/java/org/broad/igv/track/TrackLoader.java
- src/main/java/org/broad/igv/ui/IGV.java
- src/main/java/org/broad/igv/ui/action/LoadFromURLMenuAction.java
- src/main/java/org/broad/igv/ui/color/ColorUtilities.java
- src/main/java/org/broad/igv/util/GoogleUtils.java
- src/main/java/org/broad/igv/util/HttpUtils.java
- src/main/java/org/broad/igv/util/blat/BlatClient.java
- src/main/java/org/broad/igv/variant/VariantTrack.java
- src/main/resources/org/broad/igv/prefs/preferences.tab
- src/test/java/org/broad/igv/ui/color/ColorUtilitiesTest.java
- − test/batch/exit.txt


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/igv/-/compare/1b1c2829f7d7db5ec3d86ee733a5c7dada197487...d93dc52ce6080c70dfed51a454ad3d48a7b65b4f

-- 
View it on GitLab: https://salsa.debian.org/med-team/igv/-/compare/1b1c2829f7d7db5ec3d86ee733a5c7dada197487...d93dc52ce6080c70dfed51a454ad3d48a7b65b4f
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