[med-svn] [Git][med-team/changeo][master] 4 commits: New upstream version closes #1028449

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / changeo


Commits:
e340f529 by Andreas Tille at 2023-01-11T10:07:45+01:00
New upstream version closes #1028449

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f81412d6 by Andreas Tille at 2023-01-11T10:09:11+01:00
Fix cut-n-pasto in autopkgtest

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bcb0907e by Andreas Tille at 2023-01-11T11:01:12+01:00
Refresh checksums in autopkgtest to match output of new version

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f875ec34 by Andreas Tille at 2023-01-11T11:03:58+01:00
Upload to unstable

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2 changed files:

- debian/changelog
- debian/tests/run-unit-test


Changes:

=====================================
debian/changelog
=====================================
@@ -1,11 +1,13 @@
-changeo (1.3.0-1) UNRELEASED; urgency=medium
+changeo (1.3.0-1) unstable; urgency=medium
 
   * Team upload.
   * New upstream version
+    Closes: #1028449
   * Standards-Version: 4.6.2 (routine-update)
-  TODO: Check autopkgtest which fails with this new version
+  * Fix cut-n-pasto in autopkgtest
+  * Refresh checksums in autopkgtest to match output of new version
 
- -- Andreas Tille <tille at debian.org>  Wed, 21 Dec 2022 08:43:09 +0100
+ -- Andreas Tille <tille at debian.org>  Wed, 11 Jan 2023 11:01:43 +0100
 
 changeo (1.2.0-1) unstable; urgency=medium
 


=====================================
debian/tests/run-unit-test
=====================================
@@ -1,7 +1,7 @@
 #!/bin/bash
 set -e
 
-pkg=stringtie
+pkg=changeo
 CUR_DIR=`pwd`
 
 if [ "${AUTOPKGTEST_TMP}" = "" ] ; then
@@ -16,13 +16,17 @@ gunzip -r *
 
 
 MakeDb.py imgt -i S43_atleast-2.txz -s S43_atleast-2.fasta
-echo "fca65a99ea3569b99196c50c42269946  S43_atleast-2_db-pass.tsv" >> checksums
+echo "a3e982b96df29477a5eccdb19e5c2abe  S43_atleast-2_db-pass.tsv" >> checksums
 
 CreateGermlines.py -d S43_atleast-2_db-pass.tsv -g dmask -r IMGT_Human_IGHV.fasta IMGT_Human_IGHD.fasta IMGT_Human_IGHJ.fasta
-echo "8b76920fd30d640d34af22009621cc2e  S43_atleast-2_db-pass_germ-pass.tsv" >> checksums
+echo "488ab5a17d06dc1e790e3c444b88f300  S43_atleast-2_db-pass_germ-pass.tsv" >> checksums
 
 ParseDb.py select -d S43_atleast-2_db-pass.tsv -f productive -u T
-echo "7cf6dffe3d45414021d214da9ad6dc1e  S43_atleast-2_db-pass_parse-select.tsv" >> checksums
+echo "ab2391a45c16207ad6cb720a146c34bf  S43_atleast-2_db-pass_parse-select.tsv" >> checksums
+
+# Hint: there was a checksum diff between version 1.2 and 1.3
+#       After inspecting the real diff with `wdiff -3` it turned out that there was only a minor text change
+#       Thus the checksums were refreshed
 
 md5sum --check checksums
 



View it on GitLab: https://salsa.debian.org/med-team/changeo/-/compare/e754f958659327961b28ef5bab3637aeb60b6b6d...f875ec348c4564417ed4f9b15b69dcc13c88c7bc

-- 
View it on GitLab: https://salsa.debian.org/med-team/changeo/-/compare/e754f958659327961b28ef5bab3637aeb60b6b6d...f875ec348c4564417ed4f9b15b69dcc13c88c7bc
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