[med-svn] [Git][med-team/drop-seq][master] 4 commits: Depending on biojava6 instead of biojava5

[Pierre Gruet (@pgt)]

Pierre Gruet pushed to branch master at Debian Med / drop-seq


Commits:
17c90bc6 by Pierre Gruet at 2023-01-12T17:51:17+01:00
Depending on biojava6 instead of biojava5

- - - - -
c2f70442 by Pierre Gruet at 2023-01-12T17:51:32+01:00
Raising Standards version to 4.6.2 (no change)

- - - - -
feb6e811 by Pierre Gruet at 2023-01-12T17:51:45+01:00
Updating changelog

- - - - -
e51614e5 by Pierre Gruet at 2023-01-12T17:53:16+01:00
Upload to unstable

- - - - -


4 changed files:

- debian/changelog
- debian/control
- debian/drop-seq-tools.manifest
- debian/rules


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,10 @@
+drop-seq (2.5.1+dfsg-4) unstable; urgency=medium
+
+  * Depending on biojava6 instead of biojava5
+  * Raising Standards version to 4.6.2 (no change)
+
+ -- Pierre Gruet <pgt at debian.org>  Thu, 12 Jan 2023 17:53:10 +0100
+
 drop-seq (2.5.1+dfsg-3) unstable; urgency=medium
 
   * Updating d/watch after a change in the Github layout


=====================================
debian/control
=====================================
@@ -7,7 +7,7 @@ Uploaders: Andreas Tille <tille at debian.org>,
 Build-Depends: debhelper-compat (= 13),
                javahelper,
                default-jdk-headless,
-Build-Depends-Indep: libbiojava5-java,
+Build-Depends-Indep: libbiojava6-java,
                      libhtsjdk-java,
                      libpicard-java,
                      libcommons-collections4-java,
@@ -18,7 +18,7 @@ Build-Depends-Indep: libbiojava5-java,
                      libjcommander-java <!nocheck>,
                      junit4 <!nocheck>,
                      testng <!nocheck>
-Standards-Version: 4.6.1
+Standards-Version: 4.6.2
 Vcs-Browser: https://salsa.debian.org/med-team/drop-seq
 Vcs-Git: https://salsa.debian.org/med-team/drop-seq.git
 Homepage: https://github.com/broadinstitute/Drop-seq/
@@ -31,7 +31,7 @@ Depends: ${java:Depends},
          default-jre | java-runtime,
          java-wrappers,
          picard-tools,
-         libbiojava5-java,
+         libbiojava6-java,
          libpicard-java,
          libcommons-collections4-java,
          libcommons-lang-java,


=====================================
debian/drop-seq-tools.manifest
=====================================
@@ -1,3 +1,3 @@
 usr/share/java/dropseq.jar:
  Main-Class: org.broadinstitute.dropseqrna.cmdline.DropSeqMain
- Class-Path: /usr/share/java/guava.jar /usr/share/java/gson.jar /usr/share/java/htsjdk.jar /usr/share/java/picard.jar /usr/share/java/commons-collections4.jar /usr/share/java/commons-io.jar /usr/share/java/commons-lang.jar /usr/share/java/commons-math3.jar /usr/share/java/barclay.jar /usr/share/java/la4j.jar /usr/share/java/snakeyaml.jar /usr/share/java/biojava5-alignment.jar /usr/share/java/biojava5-core.jar
+ Class-Path: /usr/share/java/guava.jar /usr/share/java/gson.jar /usr/share/java/htsjdk.jar /usr/share/java/picard.jar /usr/share/java/commons-collections4.jar /usr/share/java/commons-io.jar /usr/share/java/commons-lang.jar /usr/share/java/commons-math3.jar /usr/share/java/barclay.jar /usr/share/java/la4j.jar /usr/share/java/snakeyaml.jar /usr/share/java/biojava6-alignment.jar /usr/share/java/biojava6-core.jar


=====================================
debian/rules
=====================================
@@ -17,8 +17,8 @@ override_dh_auto_configure:
 	dh_auto_configure
 	mkdir -p lib/test
 	ln -s /usr/share/java/commons-collections4.jar lib/commons-collections4.jar
-	ln -s /usr/share/java/biojava5-alignment.jar lib/biojava5-alignment.jar
-	ln -s /usr/share/java/biojava5-core.jar lib/biojava5-core.jar
+	ln -s /usr/share/java/biojava6-alignment.jar lib/biojava6-alignment.jar
+	ln -s /usr/share/java/biojava6-core.jar lib/biojava6-core.jar
 	ln -s /usr/share/java/commons-io.jar lib/commons-io.jar
 	ln -s /usr/share/java/commons-lang.jar lib/commons-lang.jar
 	ln -s /usr/share/java/commons-math3.jar lib/commons-math3.jar



View it on GitLab: https://salsa.debian.org/med-team/drop-seq/-/compare/d780973be36bf668288ef3df8bd9b0ebc7f91f10...e51614e57593c3243fccc2506dfdd6a644767805

-- 
View it on GitLab: https://salsa.debian.org/med-team/drop-seq/-/compare/d780973be36bf668288ef3df8bd9b0ebc7f91f10...e51614e57593c3243fccc2506dfdd6a644767805
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