[med-svn] [Git][med-team/libvcflib][master] 7 commits: routine-update: New upstream version

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / libvcflib


Commits:
9a48bce8 by Andreas Tille at 2023-01-16T11:31:16+01:00
routine-update: New upstream version

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79f5652d by Andreas Tille at 2023-01-16T11:31:18+01:00
New upstream version 1.0.5+dfsg
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d09134ac by Andreas Tille at 2023-01-16T11:31:46+01:00
Update upstream source from tag 'upstream/1.0.5+dfsg'

Update to upstream version '1.0.5+dfsg'
with Debian dir 7695ba6ede74b383dfaf676a97696ebcd629afb3
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a44fcb11 by Andreas Tille at 2023-01-16T11:31:46+01:00
routine-update: Standards-Version: 4.6.2

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7de5f85c by Andreas Tille at 2023-01-16T11:51:59+01:00
Refresh patches

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9a521178 by Andreas Tille at 2023-01-17T16:17:23+01:00
  * Do not support ZIG compiler which is not packaged yet
  * Build-Depends: python3-pybind11

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50141b11 by Andreas Tille at 2023-01-17T16:52:03+01:00
Build-Depends: libtabixpp-dev

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30 changed files:

- .github/workflows/ci_test.yml
- .gitignore
- .gitmodules
- CMakeLists.txt
- README.md
- RELEASE_NOTES.md
- VERSION
- multichoose/LICENSE → contrib/c-progress-bar/LICENSE
- + contrib/c-progress-bar/README.md
- + contrib/c-progress-bar/example.gif
- + contrib/c-progress-bar/progress.c
- + contrib/c-progress-bar/progress.h
- debian/changelog
- debian/control
- debian/patches/no_fsom
- debian/patches/series
- debian/patches/shared_lib.patch
- debian/patches/tabix_linking
- debian/patches/use_debian_packaged_fastahack.patch
- debian/patches/use_debian_packaged_libssw.patch
- debian/patches/use_debian_packaged_smithwaterman.patch
- debian/rules
- doc/abba-baba.md
- doc/bFst.md
- doc/dumpContigsFromHeader.md
- doc/genotypeSummary.md
- doc/hapLrt.md
- doc/iHS.md
- doc/meltEHH.md
- doc/normalize-iHS.md


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/libvcflib/-/compare/85a8355be85b38d4fcd505cc076179998740c513...50141b11c3c2e2bbeb8b397c363bfb213a42d794

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View it on GitLab: https://salsa.debian.org/med-team/libvcflib/-/compare/85a8355be85b38d4fcd505cc076179998740c513...50141b11c3c2e2bbeb8b397c363bfb213a42d794
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