[med-svn] [Git][med-team/snpeff][master] 2 commits: Lowering heap allocation on non 64-bit machines

[Pierre Gruet (@pgt)]

Pierre Gruet pushed to branch master at Debian Med / snpeff


Commits:
f9b9e255 by Pierre Gruet at 2023-01-20T20:55:27+01:00
Lowering heap allocation on non 64-bit machines

- - - - -
4b8e8d09 by Pierre Gruet at 2023-01-20T20:55:58+01:00
Upload to unstable

- - - - -


3 changed files:

- debian/changelog
- + debian/patches/lowering_heap_allocation.patch
- debian/patches/series


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,9 @@
+snpeff (5.1+d+dfsg-3) unstable; urgency=medium
+
+  * Lowering heap allocation for non 64-bit architectures
+
+ -- Pierre Gruet <pgt at debian.org>  Fri, 20 Jan 2023 20:55:32 +0100
+
 snpeff (5.1+d+dfsg-2) unstable; urgency=medium
 
   * Depending on biojava6 instead of biojava5


=====================================
debian/patches/lowering_heap_allocation.patch
=====================================
@@ -0,0 +1,21 @@
+Description: lowering heap allocation so that it passes on all supported
+ architectures; keeping it as is for 64-bit arches.
+Author: Pierre Gruet <pgt at debian.org>
+Forwarded: not-needed
+Last-Update: 2023-01-20
+
+--- a/scripts/snpEff
++++ b/scripts/snpEff
+@@ -15,7 +15,11 @@
+ 
+ jardir=/usr/share/java
+ 
+-default_jvm_mem_opts="-Xms1g -Xmx8g"
++if dpkg --print-architecture | grep -q "64" ; then
++  default_jvm_mem_opts="-Xms1g -Xmx8g"
++else
++  default_jvm_mem_opts="-Xms1g -Xmx3800m"
++fi
+ jvm_mem_opts=""
+ jvm_prop_opts=""
+ pass_args=""


=====================================
debian/patches/series
=====================================
@@ -3,3 +3,4 @@ update_launching_script_and_config_file_for_Debian.patch
 use_fastq_from_biojava6.patch
 omit_unused_junit_classes_and_integration_tests.patch
 exclude_tests_with_missing_data.patch
+lowering_heap_allocation.patch



View it on GitLab: https://salsa.debian.org/med-team/snpeff/-/compare/efe1f764e9da32a3b38f9495d6ba8de27d9ee88f...4b8e8d096516fd5eb0f3cb50f34876113c1298f4

-- 
View it on GitLab: https://salsa.debian.org/med-team/snpeff/-/compare/efe1f764e9da32a3b38f9495d6ba8de27d9ee88f...4b8e8d096516fd5eb0f3cb50f34876113c1298f4
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